RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 OMA1Q96E52 524 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 MAP6Q96JE9 813 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 ZFP3Q96NJ6 502 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 ELF4Q99607 663 aaPredicted RBP16.35■□□□□ 0.21
VIM-209ENST00000544301 DPYSL5Q9BPU6 564 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 VN1R1Q9GZP7 353 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 SLC25A18Q9H1K4 315 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 PLSCR3Q9NRY6 295 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 MKL2Q9ULH7 1088 aa16.35■□□□□ 0.21
VIM-209ENST00000544301 MRPS7Q9Y2R9 242 aaKnown RBP16.35■□□□□ 0.21
VIM-209ENST00000544301 PDCD5O14737 125 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 KHNYNO15037 678 aaKnown RBP16.34■□□□□ 0.21
VIM-209ENST00000544301 WISP1O95388 367 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 RNASE12Q5GAN4 147 aaKnown RBP16.34■□□□□ 0.21
VIM-209ENST00000544301 UBE2NLQ5JXB2 153 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 C1QL3Q5VWW1 255 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 BICRALQ6AI39 1079 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 GPR139Q6DWJ6 353 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 FAM220AQ7Z4H9 259 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 C7orf57Q8NEG2 295 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 OR1N1Q8NGS0 311 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 MCUBQ9NWR8 336 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 COPS7AQ9UBW8 275 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 CEP192Q8TEP8 1941 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 ASXL3Q9C0F0 2248 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 TRAV36DV7A0A075B6V5 113 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 A0A1B0GX78 115 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 CDC40O60508 579 aaKnown RBP eCLIP16.34■□□□□ 0.21
VIM-209ENST00000544301 ABHD16AO95870 558 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 RENP00797 406 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 GLB1P16278 677 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 ABCD3P28288 659 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 SMAD2Q15796 467 aaKnown RBP16.34■□□□□ 0.21
VIM-209ENST00000544301 LIPNQ5VXI9 398 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 BAIAP2L2Q6UXY1 529 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 SLC29A4Q7RTT9 530 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 TOMM5Q8N4H5 51 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 ASCC1Q8N9N2 400 aaKnown RBP16.34■□□□□ 0.21
VIM-209ENST00000544301 ADAMTS14Q8WXS8 1223 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 DNAJA3Q96EY1 480 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 CMTM3Q96MX0 182 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 TMEM246Q9BRR3 403 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 TBL1XR1Q9BZK7 514 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 TAS2R5Q9NYW4 299 aa16.34■□□□□ 0.21
VIM-209ENST00000544301 IFITM5A6NNB3 132 aa16.33■□□□□ 0.21
VIM-209ENST00000544301 NUDT14O95848 222 aa16.33■□□□□ 0.21
VIM-209ENST00000544301 PGCP20142 388 aa16.33■□□□□ 0.21
VIM-209ENST00000544301 ALKBH1Q13686 389 aaKnown RBP16.33■□□□□ 0.21
VIM-209ENST00000544301 EFR3AQ14156 821 aa16.33■□□□□ 0.21
VIM-209ENST00000544301 HES5Q5TA89 166 aa16.33■□□□□ 0.21
VIM-209ENST00000544301 EEF1A1P5Q5VTE0 462 aa16.33■□□□□ 0.21
VIM-209ENST00000544301 LIX1LQ8IVB5 337 aa16.33■□□□□ 0.21
VIM-209ENST00000544301 SIAH3Q8IW03 269 aa16.33■□□□□ 0.21
VIM-209ENST00000544301 CMTM4Q8IZR5 234 aa16.33■□□□□ 0.21
VIM-209ENST00000544301 ZNF441Q8N8Z8 693 aa16.33■□□□□ 0.21
VIM-209ENST00000544301 AKAP1Q92667 903 aaKnown RBP eCLIP16.33■□□□□ 0.21
VIM-209ENST00000544301 TSPAN10Q9H1Z9 355 aaPredicted RBP16.33■□□□□ 0.21
VIM-209ENST00000544301 FRRS1LQ9P0K9 344 aa16.33■□□□□ 0.21
VIM-209ENST00000544301 AIPO00170 330 aa16.33■□□□□ 0.2
VIM-209ENST00000544301 GSTZ1O43708 216 aaPredicted RBP16.33■□□□□ 0.2
VIM-209ENST00000544301 AKR7A3O95154 331 aa16.33■□□□□ 0.2
VIM-209ENST00000544301 GP1BBP13224 206 aa16.33■□□□□ 0.2
VIM-209ENST00000544301 PRKCAP17252 672 aa16.33■□□□□ 0.2
VIM-209ENST00000544301 PNLIPRP2P54317 469 aa16.33■□□□□ 0.2
VIM-209ENST00000544301 STARD6P59095 220 aa16.33■□□□□ 0.2
VIM-209ENST00000544301 GPLD1P80108 840 aa16.33■□□□□ 0.2
VIM-209ENST00000544301 PRSS42Q7Z5A4 293 aa16.33■□□□□ 0.2
VIM-209ENST00000544301 DNASE2BQ8WZ79 361 aa16.33■□□□□ 0.2
VIM-209ENST00000544301 ZNF501Q96CX3 271 aaPredicted RBP16.33■□□□□ 0.2
VIM-209ENST00000544301 SYT4Q9H2B2 425 aa16.33■□□□□ 0.2
VIM-209ENST00000544301 WDR76Q9H967 626 aa16.33■□□□□ 0.2
VIM-209ENST00000544301 ING3Q9NXR8 418 aa16.33■□□□□ 0.2
VIM-209ENST00000544301 LAMP5Q9UJQ1 280 aa16.33■□□□□ 0.2
VIM-209ENST00000544301 MYO15AQ9UKN7 3530 aa16.32■□□□□ 0.2
VIM-209ENST00000544301 A0A0A6YYJ9 748 aa16.32■□□□□ 0.2
VIM-209ENST00000544301 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.32■□□□□ 0.2
VIM-209ENST00000544301 ARHGEF9O43307 516 aa16.32■□□□□ 0.2
VIM-209ENST00000544301 ITGA10O75578 1167 aa16.32■□□□□ 0.2
VIM-209ENST00000544301 ADRB1P08588 477 aa16.32■□□□□ 0.2
VIM-209ENST00000544301 GIMD1P0DJR0 217 aa16.32■□□□□ 0.2
VIM-209ENST00000544301 AFF3P51826 1226 aaKnown RBP16.32■□□□□ 0.2
VIM-209ENST00000544301 MRPL28Q13084 256 aaKnown RBP16.32■□□□□ 0.2
VIM-209ENST00000544301 BCL2L15Q5TBC7 163 aa16.32■□□□□ 0.2
VIM-209ENST00000544301 FAM199XQ6PEV8 388 aaPredicted RBP16.32■□□□□ 0.2
VIM-209ENST00000544301 LANCL3Q6ZV70 420 aa16.32■□□□□ 0.2
VIM-209ENST00000544301 IZUMO1Q8IYV9 350 aa16.32■□□□□ 0.2
VIM-209ENST00000544301 ZNF433Q8N7K0 673 aaPredicted RBP16.32■□□□□ 0.2
VIM-209ENST00000544301 OR6N2Q8NGY6 317 aa16.32■□□□□ 0.2
VIM-209ENST00000544301 OR5AK2Q8NH90 309 aa16.32■□□□□ 0.2
VIM-209ENST00000544301 CEP76Q8TAP6 659 aa16.32■□□□□ 0.2
VIM-209ENST00000544301 PTDSS2Q9BVG9 487 aa16.32■□□□□ 0.2
VIM-209ENST00000544301 DPAGT1Q9H3H5 408 aa16.32■□□□□ 0.2
VIM-209ENST00000544301 FGF21Q9NSA1 209 aa16.32■□□□□ 0.2
VIM-209ENST00000544301 RP1P56715 2156 aa16.32■□□□□ 0.2
VIM-209ENST00000544301 TP53BP1Q12888 1972 aaPredicted RBP16.31■□□□□ 0.2
VIM-209ENST00000544301 OR6C76A6NM76 312 aa16.31■□□□□ 0.2
VIM-209ENST00000544301 FAM47E-STBD1D6RA91 191 aa16.31■□□□□ 0.2
VIM-209ENST00000544301 CTDSPLO15194 276 aa16.31■□□□□ 0.2
VIM-209ENST00000544301 BCAT2O15382 392 aaPredicted RBP16.31■□□□□ 0.2
VIM-209ENST00000544301 GPANK1O95872 356 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 93.6 ms