RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	MUC3A	Q02505	3323 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204		A0A1B0GVT2	93 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	ARPC1B	O15143	372 aa	Known RBP	11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	CT45A8	P0DMV1	189 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	CT45A9	P0DMV2	189 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	CD1C	P29017	333 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	CCR4	P51679	360 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	TSPAN5	P62079	268 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	GGTLC2	Q14390	218 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	CT45A2	Q5DJT8	189 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	FAM69A	Q5T7M9	428 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	SLC25A25	Q6KCM7	469 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	KIRREL2	Q6UWL6	708 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	APOOL	Q6UXV4	268 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	OR2T4	Q8NH00	348 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	RELT	Q969Z4	430 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	MFRP	Q9BY79	579 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204		Q9N2J8	555 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	PDE7B	Q9NP56	450 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	SLC2A4RG	Q9NR83	387 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	CLDN16	Q9Y5I7	305 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	CABIN1	Q9Y6J0	2220 aa		11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	TP53BP1	Q12888	1972 aa	Predicted RBP	11.41	□□□□□ -0.58
RNF4-222	ENST00000541204	PCDH15	Q96QU1	1955 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	OR6C68	A6NDL8	312 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204		M0R233	179 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	KHDRBS3	O75525	346 aa	Known RBP	11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	DMD	P11532	3685 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	DPP4	P27487	766 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	RBM34	P42696	430 aa	Known RBP	11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	RAD52	P43351	418 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	DIO1	P49895	249 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	NANOS3	P60323	173 aa	Known RBP	11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	AANAT	Q16613	207 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	SEZ6L2	Q6UXD5	910 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	UNQ9370/PRO34162	Q6UXP9	181 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	KANSL1	Q7Z3B3	1105 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	RASD2	Q96D21	266 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	TRIM2	Q9C040	744 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	ZNF224	Q9NZL3	707 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	NUP50	Q9UKX7	468 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	PLCL2	Q9UPR0	1127 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	TEX51	A0A1B0GUA7	166 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	C17orf105	B2RV13	164 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	GABARAP	H6UMI1	98 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	AIP	O00170	330 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	OR7A10	O76100	309 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	NSA2	O95478	260 aa	Known RBP	11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	TGM6	O95932	706 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	CSTA	P01040	98 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	SPI1	P17947	270 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	GPR3	P46089	330 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	FOXL2	P58012	376 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	RPS15	P62841	145 aa	Known RBP	11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	TCTE1	Q5JU00	501 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	ZNF595	Q8IYB9	648 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	PRR22	Q8IZ63	422 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	BCORP1	Q8N888	145 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	NPEPL1	Q8NDH3	523 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	LMF2	Q9BU23	707 aa	Known RBP	11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	OR8D2	Q9GZM6	311 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	CA10	Q9NS85	328 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	KLHL9	Q9P2J3	617 aa		11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	ZNF346	Q9UL40	294 aa	Known RBP	11.4	□□□□□ -0.58
RNF4-222	ENST00000541204	ANKRD61	A6NGH8	418 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	C4orf47	A7E2U8	309 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	PRR32	B1ATL7	298 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	PRAMEF2	O60811	474 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	KRT33A	O76009	404 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	ZFPL1	O95159	310 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	ALDOB	P05062	364 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	BCKDHB	P21953	392 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	RAB14	P61106	215 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	SKP1	P63208	163 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	ULK3	Q6PHR2	472 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	LINC00114	Q6XXX2	140 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	CHMP1B	Q7LBR1	199 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	LSMEM1	Q8N8F7	131 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	SYNPR	Q8TBG9	265 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	FCAMR	Q8WWV6	532 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	RGP1	Q92546	391 aa	Predicted RBP	11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	TSLP	Q969D9	159 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	FKRP	Q9H9S5	495 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	PLEKHA1	Q9HB21	404 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	NOX3	Q9HBY0	568 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	NANS	Q9NR45	359 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	ZNF275	Q9NSD4	429 aa	Predicted RBP	11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	MGAT4C	Q9UBM8	478 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	MAB21L2	Q9Y586	359 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	CDC14C	A4D256	554 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	TMEM150C	B9EJG8	249 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	ZNF749	O43361	778 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	ECD	O95905	644 aa	Predicted RBP	11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	ANXA7	P20073	488 aa	Known RBP	11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	PTH2R	P49190	550 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	ARL4D	P49703	201 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	ERVK-25	P63136	954 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	LGALS3BP	Q08380	585 aa		11.39	□□□□□ -0.59
RNF4-222	ENST00000541204	METTL11B	Q5VVY1	283 aa		11.39	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 129.8 ms