RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 HSD17B7P56937 341 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 GPLD1P80108 840 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 FMODQ06828 376 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 TDGQ13569 410 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 CORO6Q6QEF8 472 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 HIST3H2AQ7L7L0 130 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 GRAMD2AQ8IUY3 354 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 HIST1H2ACQ93077 130 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 RNF170Q96K19 258 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 CACNG6Q9BXT2 260 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 FGF21Q9NSA1 209 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 LAMP5Q9UJQ1 280 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 TLCD2A6NGC4 264 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 SLC16A7O60669 478 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 SLC19A2O60779 497 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 SLC43A1O75387 559 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 SPARCP09486 303 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 NPR2P20594 1047 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 FASLGP48023 281 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 ARRB1P49407 418 aaPredicted RBP15.34■□□□□ 0.05
USP28-208ENST00000540438 UBE2MP61081 183 aaKnown RBP15.34■□□□□ 0.05
USP28-208ENST00000540438 OC90Q02509 493 aaPredicted RBP15.34■□□□□ 0.05
USP28-208ENST00000540438 BIKQ13323 160 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 CDK10Q15131 360 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 WBP2NLQ6ICG8 309 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 PXKQ7Z7A4 578 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 LINC00346Q8IVM7 164 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 ZNF676Q8N7Q3 588 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 YIPF5Q969M3 257 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 KCNJ15Q99712 375 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 EMC6Q9BV81 110 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 VN1R1Q9GZP7 353 aa15.34■□□□□ 0.05
USP28-208ENST00000540438 LAMA5O15230 3695 aa15.33■□□□□ 0.05
USP28-208ENST00000540438 ORC5O43913 435 aa15.33■□□□□ 0.05
USP28-208ENST00000540438 FBXW4P57775 412 aa15.33■□□□□ 0.05
USP28-208ENST00000540438 SLC6A19Q695T7 634 aa15.33■□□□□ 0.05
USP28-208ENST00000540438 OR7E24Q6IFN5 339 aa15.33■□□□□ 0.05
USP28-208ENST00000540438 OR52I2Q8NH67 350 aa15.33■□□□□ 0.05
USP28-208ENST00000540438 OR14A16Q8NHC5 309 aa15.33■□□□□ 0.05
USP28-208ENST00000540438 NSMAFQ92636 917 aa15.33■□□□□ 0.05
USP28-208ENST00000540438 LCORQ96JN0 433 aaPredicted RBP15.33■□□□□ 0.05
USP28-208ENST00000540438 HRH3Q9Y5N1 445 aa15.33■□□□□ 0.05
USP28-208ENST00000540438 CD14P08571 375 aa15.33■□□□□ 0.04
USP28-208ENST00000540438 RORAP35398 523 aa15.33■□□□□ 0.04
USP28-208ENST00000540438 C19orf57Q0VDD7 668 aa15.33■□□□□ 0.04
USP28-208ENST00000540438 C14orf28Q4W4Y0 310 aa15.33■□□□□ 0.04
USP28-208ENST00000540438 GLB1L2Q8IW92 636 aa15.33■□□□□ 0.04
USP28-208ENST00000540438 ZNF721Q8TF20 911 aa15.33■□□□□ 0.04
USP28-208ENST00000540438 OMA1Q96E52 524 aa15.33■□□□□ 0.04
USP28-208ENST00000540438 OR2B2Q9GZK3 357 aa15.33■□□□□ 0.04
USP28-208ENST00000540438 TWSG1Q9GZX9 223 aa15.33■□□□□ 0.04
USP28-208ENST00000540438 SLCO1C1Q9NYB5 712 aa15.33■□□□□ 0.04
USP28-208ENST00000540438 TMA7Q9Y2S6 64 aaKnown RBP15.33■□□□□ 0.04
USP28-208ENST00000540438 IGHV1OR21-1A0A087WYE8 117 aa15.33■□□□□ 0.04
USP28-208ENST00000540438 EFCAB7A8K855 629 aa15.33■□□□□ 0.04
USP28-208ENST00000540438 SOX1O00570 391 aaPredicted RBP15.33■□□□□ 0.04
USP28-208ENST00000540438 SC5DO75845 299 aa15.33■□□□□ 0.04
USP28-208ENST00000540438 ADRA2CP18825 462 aa15.33■□□□□ 0.04
USP28-208ENST00000540438 ABCD3P28288 659 aa15.33■□□□□ 0.04
USP28-208ENST00000540438 CLDN20P56880 219 aa15.33■□□□□ 0.04
USP28-208ENST00000540438 ARL5BQ96KC2 179 aa15.33■□□□□ 0.04
USP28-208ENST00000540438 NOTOA8MTQ0 251 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 FAM47E-STBD1D6RA91 191 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 GLULP15104 373 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 RBM34P42696 430 aaKnown RBP15.32■□□□□ 0.04
USP28-208ENST00000540438 ACTC1P68032 377 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 ACTA1P68133 377 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 LGALS3BPQ08380 585 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 OR11H7Q8NGC8 314 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 CYYR1Q96J86 154 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 MICU1Q9BPX6 476 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 ZNF304Q9HCX3 659 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 MED11Q9P086 117 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 PRODH2Q9UF12 536 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 BOD1L1Q8NFC6 3051 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 SLC25A12O75746 678 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 HPXP02790 462 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 SRFP11831 508 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 FBLP22087 321 aaKnown RBP15.32■□□□□ 0.04
USP28-208ENST00000540438 SLC6A1P30531 599 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 DCTDP32321 178 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 GDNFP39905 211 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 RRAS2P62070 204 aaPredicted RBP15.32■□□□□ 0.04
USP28-208ENST00000540438 MRPL28Q13084 256 aaKnown RBP15.32■□□□□ 0.04
USP28-208ENST00000540438 CDONQ4KMG0 1287 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 Q7L0L9 218 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 MS4A15Q8N5U1 240 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 PLPP7Q8NBV4 271 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 C1orf216Q8TAB5 229 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 METTL21AQ8WXB1 218 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 TMEM106AQ96A25 262 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 RNF166Q96A37 237 aaPredicted RBP15.32■□□□□ 0.04
USP28-208ENST00000540438 ZDHHC12Q96GR4 267 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 MED28Q9H204 178 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 MED29Q9NX70 200 aa15.32■□□□□ 0.04
USP28-208ENST00000540438 GLCEO94923 617 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 TCRBP04435 133 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 APEHP13798 732 aaKnown RBP15.31■□□□□ 0.04
USP28-208ENST00000540438 EFNB2P52799 333 aa15.31■□□□□ 0.04
USP28-208ENST00000540438 HNRNPKP61978 463 aaKnown RBP eCLIP15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms