RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 C20orf196Q8IYI0 205 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 OR6S1Q8NH40 331 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 DNAJA4Q8WW22 397 aaPredicted RBP11.68□□□□□ -0.54
SS18-204ENST00000539244 SLC41A3Q96GZ6 507 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 ITCHQ96J02 903 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 MAELQ96JY0 434 aaKnown RBP11.68□□□□□ -0.54
SS18-204ENST00000539244 RSPO3Q9BXY4 272 aaPredicted RBP11.68□□□□□ -0.54
SS18-204ENST00000539244 TPK1Q9H3S4 243 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 DENND2DQ9H6A0 471 aaPredicted RBP11.68□□□□□ -0.54
SS18-204ENST00000539244 RMND5AQ9H871 391 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 A4GALTQ9NPC4 353 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 SDR39U1Q9NRG7 319 aaPredicted RBP11.68□□□□□ -0.54
SS18-204ENST00000539244 REV1Q9UBZ9 1251 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 SPEF1Q9Y4P9 236 aa11.68□□□□□ -0.54
SS18-204ENST00000539244 TRAV36DV7A0A075B6V5 113 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 A0A1B0GWA3 101 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 MS4A18H0YCH9 400 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 M0R3G1 203 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 SNNO75324 88 aaPredicted RBP11.67□□□□□ -0.54
SS18-204ENST00000539244 SEC14L2O76054 403 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 VENTXO95231 258 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 HLA-HP01893 362 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 TFP02787 698 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 ETS2P15036 469 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 HTR2AP28223 471 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 PRKAR1BP31321 381 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 CAPZA2P47755 286 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 COMPP49747 757 aaPredicted RBP11.67□□□□□ -0.54
SS18-204ENST00000539244 MRPS11P82912 194 aaKnown RBP11.67□□□□□ -0.54
SS18-204ENST00000539244 MFSD13AQ14CX5 517 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 RGNQ15493 299 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 FXNQ16595 210 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 GSG1Q2KHT4 349 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 MS4A18Q3C1V0 323 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 REP15Q6BDI9 236 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 UEVLDQ8IX04 471 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 SCAIQ8N9R8 606 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 CLDND2Q8NHS1 167 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 BBS10Q8TAM1 723 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 TMEM186Q96B77 213 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 MS4A3Q96HJ5 214 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 THAP1Q9NVV9 213 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 ZNF224Q9NZL3 707 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 KLHL14Q9P2G3 628 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 RPS6KB2Q9UBS0 482 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 CORINQ9Y5Q5 1042 aa11.67□□□□□ -0.54
SS18-204ENST00000539244 A0A087WUJ7 227 aa11.66□□□□□ -0.54
SS18-204ENST00000539244 HPRP00739 348 aa11.66□□□□□ -0.54
SS18-204ENST00000539244 HPXP02790 462 aa11.66□□□□□ -0.54
SS18-204ENST00000539244 MSMBP08118 114 aa11.66□□□□□ -0.54
SS18-204ENST00000539244 NUDT7P0C024 238 aa11.66□□□□□ -0.54
SS18-204ENST00000539244 HLA-DOBP13765 273 aa11.66□□□□□ -0.54
SS18-204ENST00000539244 HOXB9P17482 250 aaPredicted RBP11.66□□□□□ -0.54
SS18-204ENST00000539244 GPR6P46095 362 aaPredicted RBP11.66□□□□□ -0.54
SS18-204ENST00000539244 TMEM33P57088 247 aa11.66□□□□□ -0.54
SS18-204ENST00000539244 RPS23P62266 143 aaKnown RBP11.66□□□□□ -0.54
SS18-204ENST00000539244 SCGB2A2Q13296 93 aa11.66□□□□□ -0.54
SS18-204ENST00000539244 ALG10BQ5I7T1 473 aa11.66□□□□□ -0.54
SS18-204ENST00000539244 FAM91A1Q658Y4 838 aa11.66□□□□□ -0.54
SS18-204ENST00000539244 GTF2H4Q92759 462 aa11.66□□□□□ -0.54
SS18-204ENST00000539244 RDH5Q92781 318 aa11.66□□□□□ -0.54
SS18-204ENST00000539244 MAL2Q969L2 176 aa11.66□□□□□ -0.54
SS18-204ENST00000539244 PLA2G12AQ9BZM1 189 aa11.66□□□□□ -0.54
SS18-204ENST00000539244 RAD21L1Q9H4I0 556 aa11.66□□□□□ -0.54
SS18-204ENST00000539244 OCEL1Q9H607 264 aa11.66□□□□□ -0.54
SS18-204ENST00000539244 METTL17Q9H7H0 456 aaPredicted RBP11.66□□□□□ -0.54
SS18-204ENST00000539244 HIF1ANQ9NWT6 349 aa11.66□□□□□ -0.54
SS18-204ENST00000539244 TENM1Q9UKZ4 2725 aa11.66□□□□□ -0.54
SS18-204ENST00000539244 FAM157AC9JC47 383 aa11.65□□□□□ -0.54
SS18-204ENST00000539244 CLIC1O00299 241 aa11.65□□□□□ -0.54
SS18-204ENST00000539244 BGLAPP02818 100 aa11.65□□□□□ -0.54
SS18-204ENST00000539244 SAGP10523 405 aaPredicted RBP11.65□□□□□ -0.54
SS18-204ENST00000539244 CD79AP11912 226 aa11.65□□□□□ -0.54
SS18-204ENST00000539244 COL8A2P25067 703 aa11.65□□□□□ -0.54
SS18-204ENST00000539244 POLR2JP52435 117 aaKnown RBP11.65□□□□□ -0.54
SS18-204ENST00000539244 TRMT5Q32P41 509 aaKnown RBP11.65□□□□□ -0.54
SS18-204ENST00000539244 ULK3Q6PHR2 472 aa11.65□□□□□ -0.54
SS18-204ENST00000539244 DHRS4L2Q6PKH6 230 aa11.65□□□□□ -0.54
SS18-204ENST00000539244 ZNF813Q6ZN06 617 aa11.65□□□□□ -0.54
SS18-204ENST00000539244 USP43Q70EL4 1123 aa11.65□□□□□ -0.54
SS18-204ENST00000539244 COMTD1Q86VU5 262 aa11.65□□□□□ -0.54
SS18-204ENST00000539244 CARM1Q86X55 608 aa11.65□□□□□ -0.54
SS18-204ENST00000539244 SNX32Q86XE0 403 aa11.65□□□□□ -0.54
SS18-204ENST00000539244 YIPF5Q969M3 257 aa11.65□□□□□ -0.54
SS18-204ENST00000539244 EMC6Q9BV81 110 aa11.65□□□□□ -0.54
SS18-204ENST00000539244 PAIP1Q9H074 479 aaKnown RBP11.65□□□□□ -0.54
SS18-204ENST00000539244 ZNF385DQ9H6B1 395 aa11.65□□□□□ -0.54
SS18-204ENST00000539244 KCNK9Q9NPC2 374 aa11.65□□□□□ -0.54
SS18-204ENST00000539244 B3GAT2Q9NPZ5 323 aa11.65□□□□□ -0.54
SS18-204ENST00000539244 FBXL3Q9UKT7 428 aa11.65□□□□□ -0.54
SS18-204ENST00000539244 GRIP1Q9Y3R0 1128 aa11.65□□□□□ -0.54
SS18-204ENST00000539244 NOX1Q9Y5S8 564 aa11.65□□□□□ -0.54
SS18-204ENST00000539244 RP2O75695 350 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 NCR1O76036 304 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 UBL3O95164 117 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 GAAP10253 952 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 ARAFP10398 606 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 B4GALT1P15291 398 aa11.64□□□□□ -0.55
SS18-204ENST00000539244 NQO1P15559 274 aaKnown RBP11.64□□□□□ -0.55
SS18-204ENST00000539244 ALDH3B1P43353 468 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms