RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 TBC1D15Q8TC07 691 aa5.4□□□□□ -1.54
CD44-237ENST00000534082 CIDECQ96AQ7 238 aaPredicted RBP5.4□□□□□ -1.54
CD44-237ENST00000534082 MS4A14Q96JA4 679 aa5.4□□□□□ -1.54
CD44-237ENST00000534082 BAG1Q99933 345 aaPredicted RBP5.4□□□□□ -1.54
CD44-237ENST00000534082 LINC00470Q9BZP3 86 aa5.4□□□□□ -1.54
CD44-237ENST00000534082 IQCGQ9H095 443 aaKnown RBP5.4□□□□□ -1.54
CD44-237ENST00000534082 PIGUQ9H490 435 aa5.4□□□□□ -1.54
CD44-237ENST00000534082 PATZ1Q9HBE1 687 aaKnown RBP5.4□□□□□ -1.54
CD44-237ENST00000534082 IL20RAQ9UHF4 553 aa5.4□□□□□ -1.54
CD44-237ENST00000534082 SLC7A8Q9UHI5 535 aa5.4□□□□□ -1.54
CD44-237ENST00000534082 ZNF225Q9UK10 706 aa5.4□□□□□ -1.54
CD44-237ENST00000534082 IGLV3-9A0A075B6K5 115 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 CENPVL1A0A0U1RR11 272 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 SLC22A23A1A5C7 686 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 ZC3H12DA2A288 527 aaKnown RBP5.39□□□□□ -1.55
CD44-237ENST00000534082 FAM159BA6NKW6 160 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 AQP7P3A6NL99 342 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 F5H0A9 414 aaPredicted RBP5.39□□□□□ -1.55
CD44-237ENST00000534082 STX16-NPEPL1H3BU86 382 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 RPL36A-HNRNPH2H7BZ11 118 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 STX16O14662 325 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 URI1O94763 535 aaPredicted RBP5.39□□□□□ -1.55
CD44-237ENST00000534082 UBOX5O94941 541 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 MT-ND5P03915 603 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 HMGN2P05204 90 aaKnown RBP5.39□□□□□ -1.55
CD44-237ENST00000534082 SBK2P0C263 348 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 OR8G3PP0DMU2 310 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 CD79AP11912 226 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 SSTR1P30872 391 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 LSP1P33241 339 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 CDH13P55290 713 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 SELENOVP59797 346 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 PAX2Q02962 417 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 GLO1Q04760 184 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 DMRTC1Q5HYR2 192 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 FAM209AQ5JX71 171 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 GRTP1Q5TC63 336 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 PRAMEF8Q5VWM4 474 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 PRAMEF7Q5VXH5 474 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 DHRS7BQ6IAN0 325 aaPredicted RBP5.39□□□□□ -1.55
CD44-237ENST00000534082 KLC3Q6P597 504 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 EMBQ6PCB8 327 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 LRRN1Q6UXK5 716 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 GDPGP1Q6ZNW5 385 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 CREB3L2Q70SY1 520 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 TMEM139Q8IV31 216 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 CTAGE3PQ8IX95 158 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 CCDC36Q8IYA8 594 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 SYNPRQ8TBG9 265 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 ZNF483Q8TF39 744 aaPredicted RBP5.39□□□□□ -1.55
CD44-237ENST00000534082 DDIT4LQ96D03 193 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 NEURL3Q96EH8 262 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 ZNF75AQ96N20 296 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 GPR78Q96P69 363 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 TBX15Q96SF7 602 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 KRTAP9-9Q9BYP9 154 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 KRTAP9-4Q9BYQ2 154 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 PIF1Q9H611 641 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 ZCCHC3Q9NUD5 404 aaKnown RBP5.39□□□□□ -1.55
CD44-237ENST00000534082 SIRT5Q9NXA8 310 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 DCAF16Q9NXF7 216 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 B3GNT2Q9NY97 397 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 SLCO1C1Q9NYB5 712 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.39□□□□□ -1.55
CD44-237ENST00000534082 PCDHGB4Q9UN71 923 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 POLR3HQ9Y535 204 aaPredicted RBP5.39□□□□□ -1.55
CD44-237ENST00000534082 NPTNQ9Y639 398 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 KIAA1109Q2LD37 5005 aa5.39□□□□□ -1.55
CD44-237ENST00000534082 ALMS1Q8TCU4 4167 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 TMED7-TICAM2A0A0A6YYA0 188 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 IGHV2-70DA0A0C4DH43 119 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 TCRBV9S1A1TA0A576 114 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 TMEM72A0PK05 275 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 PRAMEF27A3QJZ7 478 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 ZNF99A8MXY4 864 aaPredicted RBP5.38□□□□□ -1.55
CD44-237ENST00000534082 E7ESA3 106 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 TNFRSF13BO14836 293 aaPredicted RBP5.38□□□□□ -1.55
CD44-237ENST00000534082 TM9SF1O15321 606 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 MGRN1O60291 552 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 SMIM24O75264 130 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 BCAS1O75363 584 aaPredicted RBP5.38□□□□□ -1.55
CD44-237ENST00000534082 SLC43A1O75387 559 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 TSPAN9O75954 239 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 KLHL2O95198 593 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 RAB36O95755 333 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 C2P06681 752 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 UROSP10746 265 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 ZNF250P15622 560 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 IGLL1P15814 213 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 HMOX2P30519 316 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 RYKP34925 604 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 PTDSS1P48651 473 aaKnown RBP5.38□□□□□ -1.55
CD44-237ENST00000534082 ZNF81P51508 661 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 PCBP3P57721 371 aaKnown RBP5.38□□□□□ -1.55
CD44-237ENST00000534082 BPIFB3P59826 476 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 PIGFQ07326 219 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 CEACAM7Q14002 265 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 RASA2Q15283 850 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 OR7A5Q15622 319 aa5.38□□□□□ -1.55
CD44-237ENST00000534082 CEACAM16Q2WEN9 425 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms