RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 SDHCQ99643 169 aaPredicted RBP5.08□□□□□ -1.6
CD44-231ENST00000531110 CMSS1Q9BQ75 279 aaKnown RBP5.08□□□□□ -1.6
CD44-231ENST00000531110 FAM110AQ9BQ89 295 aa5.08□□□□□ -1.6
CD44-231ENST00000531110 C11orf70Q9BRQ4 267 aa5.08□□□□□ -1.6
CD44-231ENST00000531110 SLC35A5Q9BS91 424 aa5.08□□□□□ -1.6
CD44-231ENST00000531110 H2AFJQ9BTM1 129 aa5.08□□□□□ -1.6
CD44-231ENST00000531110 APOL6Q9BWW8 343 aa5.08□□□□□ -1.6
CD44-231ENST00000531110 ACTR3CQ9C0K3 210 aaPredicted RBP5.08□□□□□ -1.6
CD44-231ENST00000531110 WWTR1Q9GZV5 400 aa5.08□□□□□ -1.6
CD44-231ENST00000531110 DUSP21Q9H596 190 aa5.08□□□□□ -1.6
CD44-231ENST00000531110 ZNF430Q9H8G1 570 aaPredicted RBP5.08□□□□□ -1.6
CD44-231ENST00000531110 EVA1AQ9H8M9 152 aa5.08□□□□□ -1.6
CD44-231ENST00000531110 WFDC1Q9HC57 220 aa5.08□□□□□ -1.6
CD44-231ENST00000531110 CSNK1G1Q9HCP0 422 aa5.08□□□□□ -1.6
CD44-231ENST00000531110 SMCO4Q9NRQ5 59 aa5.08□□□□□ -1.6
CD44-231ENST00000531110 PNO1Q9NRX1 252 aaKnown RBP5.08□□□□□ -1.6
CD44-231ENST00000531110 ECHDC1Q9NTX5 307 aa5.08□□□□□ -1.6
CD44-231ENST00000531110 C1orf109Q9NX04 203 aa5.08□□□□□ -1.6
CD44-231ENST00000531110 P4HTMQ9NXG6 502 aa5.08□□□□□ -1.6
CD44-231ENST00000531110 CLEC5AQ9NY25 188 aa5.08□□□□□ -1.6
CD44-231ENST00000531110 LEF1Q9UJU2 399 aaPredicted RBP5.08□□□□□ -1.6
CD44-231ENST00000531110 C3orf18Q9UK00 162 aa5.08□□□□□ -1.6
CD44-231ENST00000531110 CLEC4EQ9ULY5 219 aa5.08□□□□□ -1.6
CD44-231ENST00000531110 SLC7A11Q9UPY5 501 aa5.08□□□□□ -1.6
CD44-231ENST00000531110 TPRKBQ9Y3C4 175 aa5.08□□□□□ -1.6
CD44-231ENST00000531110 PHIPQ8WWQ0 1821 aa5.08□□□□□ -1.6
CD44-231ENST00000531110 MROH2AA6NES4 1674 aa5.08□□□□□ -1.6
CD44-231ENST00000531110 ABCC1P33527 1531 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 FER1L6Q2WGJ9 1857 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 NALCNQ8IZF0 1738 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 XRN1Q8IZH2 1706 aaKnown RBP5.07□□□□□ -1.6
CD44-231ENST00000531110 IQCMA0A1B0GVH7 501 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 HMSDA8MTL9 139 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 SGK494L7N484 410 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 DVL1O14640 695 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 OR10H2O60403 315 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 RAMP3O60896 148 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 KHDRBS3O75525 346 aaKnown RBP5.07□□□□□ -1.6
CD44-231ENST00000531110 CLDN9O95484 217 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 C6orf47O95873 294 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 SERPINA3P01011 423 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 OR8U8P0C7N1 319 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 SNHG28P0DPA3 235 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 NQO2P16083 231 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 PGAM1P18669 254 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 ABCD3P28288 659 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 SFNP31947 248 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 TNFSF8P32971 234 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 RPS9P46781 194 aaKnown RBP5.07□□□□□ -1.6
CD44-231ENST00000531110 FMO5P49326 533 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 MRPL19P49406 292 aaKnown RBP5.07□□□□□ -1.6
CD44-231ENST00000531110 CYB561P49447 251 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 TAF6P49848 677 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 SUOXP51687 545 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 FGF8P55075 233 aaPredicted RBP5.07□□□□□ -1.6
CD44-231ENST00000531110 BIDP55957 195 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 TIMM10P62072 90 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 CAPSQ13938 189 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 FGFBP1Q14512 234 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 SLC10A1Q14973 349 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 PEA15Q15121 130 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 CARTPTQ16568 116 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 NRF1Q16656 503 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 ISXQ2M1V0 245 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 KLHL22Q53GT1 634 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 XKR6Q5GH73 641 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 C6orf141Q5SZD1 244 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 SPOUT1Q5T280 376 aaKnown RBP5.07□□□□□ -1.6
CD44-231ENST00000531110 LGSNQ5TDP6 509 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 OR2G6Q5TZ20 316 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 ZNF470Q6ECI4 717 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 PSRC1Q6PGN9 363 aaPredicted RBP5.07□□□□□ -1.6
CD44-231ENST00000531110 ALKAL1Q6UXT8 129 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 RBMS3Q6XE24 437 aaKnown RBP5.07□□□□□ -1.6
CD44-231ENST00000531110 FAM83HQ6ZRV2 1179 aaPredicted RBP5.07□□□□□ -1.6
CD44-231ENST00000531110 C9orf47Q6ZRZ4 202 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 LRRC70Q7Z2Q7 622 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 PIWIL4Q7Z3Z4 852 aaKnown RBP5.07□□□□□ -1.6
CD44-231ENST00000531110 LYG2Q86SG7 212 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 THOC6Q86W42 341 aaKnown RBP5.07□□□□□ -1.6
CD44-231ENST00000531110 GPSM1Q86YR5 675 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 CNTN4Q8IWV2 1026 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 BAP18Q8IXM2 172 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 NRMQ8IXM6 262 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 KATNAL2Q8IYT4 538 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 PUSL1Q8N0Z8 303 aaKnown RBP5.07□□□□□ -1.6
CD44-231ENST00000531110 PRELID2Q8N945 189 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 OR2AP1Q8NGE2 309 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 OR13C8Q8NGS7 320 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 TRMT10AQ8TBZ6 339 aaKnown RBP5.07□□□□□ -1.6
CD44-231ENST00000531110 CD200R1Q8TD46 325 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 FAM222BQ8WU58 562 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 CYGBQ8WWM9 190 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 PIGBQ92521 554 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 PHYHIPQ92561 330 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 MRPS31Q92665 395 aaKnown RBP5.07□□□□□ -1.6
CD44-231ENST00000531110 CDS1Q92903 461 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 SPSB1Q96BD6 273 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 HAVCR1Q96D42 359 aa5.07□□□□□ -1.6
CD44-231ENST00000531110 FAM120BQ96EK7 910 aaKnown RBP5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms