RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 KIR3DX1Q9H7L2 352 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 NRIP3Q9NQ35 241 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 CMC2Q9NRP2 79 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 SPACA6W5XKT8 324 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 BRWD1Q9NSI6 2320 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 MEIS3P1A6NDR6 274 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 NAP1L6A6NFF2 107 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 IFITM5A6NNB3 132 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 LINC00587B1AMM8 73 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 C5orf67F2Z3F1 127 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 NTSR1P30989 418 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 TSFMP43897 325 aaKnown RBP12.99□□□□□ -0.33
USP48-213ENST00000529637 TAS2R43P59537 309 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 IL10RAQ13651 578 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 CDK5R1Q15078 307 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 TMEM196Q5HYL7 178 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 OLFML2AQ68BL7 652 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 BAIAP2L2Q6UXY1 529 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 PM20D2Q8IYS1 436 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 DNAAF1Q8NEP3 725 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 TMEM185AQ8NFB2 350 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 OR5T2Q8NGG2 359 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 SLC22A18Q96BI1 424 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 MNTQ99583 582 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 CMSS1Q9BQ75 279 aaKnown RBP12.99□□□□□ -0.33
USP48-213ENST00000529637 CLDND1Q9NY35 253 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 DAPP1Q9UN19 280 aa12.99□□□□□ -0.33
USP48-213ENST00000529637 ARL6IP5O75915 188 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 KLF8O95600 359 aaPredicted RBP12.98□□□□□ -0.33
USP48-213ENST00000529637 PPP1R3DO95685 299 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 IL5P05113 134 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 ZNF10P21506 573 aaPredicted RBP12.98□□□□□ -0.33
USP48-213ENST00000529637 SLC2A5P22732 501 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 NDUFS1P28331 727 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 KCNJ3P48549 501 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 AP3S2P59780 193 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 HYAL4Q2M3T9 481 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 ZNF542PQ5EBM4 170 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 SAMD14Q8IZD0 417 aaPredicted RBP12.98□□□□□ -0.33
USP48-213ENST00000529637 ZFP82Q8N141 532 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 OR6K3Q8NGY3 331 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 SERINC2Q96SA4 455 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 CCDC3Q9BQI4 270 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 GPR174Q9BXC1 333 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 FN3KQ9H479 309 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 TMEM138Q9NPI0 162 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 CTSFQ9UBX1 484 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 OR5V1Q9UGF6 321 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 ALPK2Q86TB3 2170 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 IMPA2O14732 288 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 PLRG1O43660 514 aaKnown RBP12.98□□□□□ -0.33
USP48-213ENST00000529637 HTR2AP28223 471 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 RAB13P51153 203 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 ZNF136P52737 540 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 POLR2GP62487 172 aaKnown RBP eCLIP12.98□□□□□ -0.33
USP48-213ENST00000529637 C11orf88Q6PI97 169 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 ZNRF4Q8WWF5 429 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 GNG8Q9UK08 70 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 ZNF223Q9UK11 482 aaPredicted RBP12.98□□□□□ -0.33
USP48-213ENST00000529637 H3BSH0 61 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 FGF17O60258 216 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 H2AFB1P0C5Y9 115 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 MEOX2P50222 304 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 SIRPAP78324 504 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 ARHGAP11BQ3KRB8 267 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 YOD1Q5VVQ6 348 aaPredicted RBP12.98□□□□□ -0.33
USP48-213ENST00000529637 PWWP2BQ6NUJ5 590 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 FBXO46Q6PJ61 603 aaPredicted RBP12.98□□□□□ -0.33
USP48-213ENST00000529637 OVCH1Q7RTY7 1134 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 ZNF619Q8N2I2 560 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 FRMD1Q8N878 549 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 BPIFA2Q96DR5 249 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 WDR92Q96MX6 357 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 ZNF559Q9BR84 538 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 C2orf42Q9NWW7 574 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 SLC39A1Q9NY26 324 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 RASL12Q9NYN1 266 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 MED31Q9Y3C7 131 aa12.98□□□□□ -0.33
USP48-213ENST00000529637 TRAV14DV4A0A0A6YYC5 116 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 RIIAD1A6NNX1 92 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 H0YC42 278 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 OGG1O15527 345 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 OR10H2O60403 315 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 EIF4E2O60573 245 aaKnown RBP12.97□□□□□ -0.33
USP48-213ENST00000529637 ADCYAP1P18509 176 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 EDNRAP25101 427 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 UBE2IP63279 158 aaKnown RBP12.97□□□□□ -0.33
USP48-213ENST00000529637 GPR18Q14330 331 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 ZNF528Q3MIS6 628 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 ABHD13Q7L211 337 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 CAMKVQ8NCB2 501 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 OR4C6Q8NH72 309 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 UTP23Q9BRU9 249 aaKnown RBP12.97□□□□□ -0.33
USP48-213ENST00000529637 IL21RQ9HBE5 538 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 INPP5EQ9NRR6 644 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 OBP2AQ9NY56 170 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 GXYLT2A0PJZ3 443 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 H0YGG7 62 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 K7EQS6 105 aa12.97□□□□□ -0.33
USP48-213ENST00000529637 AQP8O94778 261 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms