RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 DEF8Q6ZN54 512 aa20.28■□□□□ 0.84
CPSF1-202ENST00000527827 MSANTD1Q6ZTZ1 278 aa20.28■□□□□ 0.84
CPSF1-202ENST00000527827 C20orf196Q8IYI0 205 aa20.28■□□□□ 0.84
CPSF1-202ENST00000527827 LSMEM1Q8N8F7 131 aa20.28■□□□□ 0.84
CPSF1-202ENST00000527827 ADPRHL1Q8NDY3 354 aa20.28■□□□□ 0.84
CPSF1-202ENST00000527827 PAIP2Q9BPZ3 127 aaKnown RBP20.28■□□□□ 0.84
CPSF1-202ENST00000527827 RMND5AQ9H871 391 aa20.28■□□□□ 0.84
CPSF1-202ENST00000527827 A4GALTQ9NPC4 353 aa20.28■□□□□ 0.84
CPSF1-202ENST00000527827 KLHL14Q9P2G3 628 aa20.28■□□□□ 0.84
CPSF1-202ENST00000527827 A0A1B0GWA3 101 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 M0R233 179 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 SNNO75324 88 aaPredicted RBP20.27■□□□□ 0.84
CPSF1-202ENST00000527827 HPXP02790 462 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 KITP10721 976 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 PCMT1P22061 227 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 COL8A2P25067 703 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 CFPP27918 469 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 GSG1Q2KHT4 349 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 NHLRC1Q6VVB1 395 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 C12orf54Q6X4T0 127 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 ZNF627Q7L945 461 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 NET1Q7Z628 596 aaPredicted RBP20.27■□□□□ 0.84
CPSF1-202ENST00000527827 COMTD1Q86VU5 262 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 WDFY1Q8IWB7 410 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 SEMA6DQ8NFY4 1073 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 OR9I1Q8NGQ6 314 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 CLDND2Q8NHS1 167 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 BBS10Q8TAM1 723 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 ZBTB9Q96C00 473 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 MAELQ96JY0 434 aaKnown RBP20.27■□□□□ 0.84
CPSF1-202ENST00000527827 EMC6Q9BV81 110 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 RACGAP1Q9H0H5 632 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 OCEL1Q9H607 264 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 METTL17Q9H7H0 456 aaPredicted RBP20.27■□□□□ 0.84
CPSF1-202ENST00000527827 SDR39U1Q9NRG7 319 aaPredicted RBP20.27■□□□□ 0.84
CPSF1-202ENST00000527827 ZNF224Q9NZL3 707 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 ZIM2Q9NZV7 527 aa20.27■□□□□ 0.84
CPSF1-202ENST00000527827 TRAV36DV7A0A075B6V5 113 aa20.26■□□□□ 0.83
CPSF1-202ENST00000527827 FAM157AC9JC47 383 aa20.26■□□□□ 0.83
CPSF1-202ENST00000527827 CD79AP11912 226 aa20.26■□□□□ 0.83
CPSF1-202ENST00000527827 BMP2P12643 396 aa20.26■□□□□ 0.83
CPSF1-202ENST00000527827 TCN1P20061 433 aaPredicted RBP20.26■□□□□ 0.83
CPSF1-202ENST00000527827 GLRXP35754 106 aa20.26■□□□□ 0.83
CPSF1-202ENST00000527827 PIGFQ07326 219 aa20.26■□□□□ 0.83
CPSF1-202ENST00000527827 SLC9B1Q4ZJI4 515 aa20.26■□□□□ 0.83
CPSF1-202ENST00000527827 C6orf10Q5SRN2 563 aa20.26■□□□□ 0.83
CPSF1-202ENST00000527827 GLCCI1Q86VQ1 547 aa20.26■□□□□ 0.83
CPSF1-202ENST00000527827 UEVLDQ8IX04 471 aa20.26■□□□□ 0.83
CPSF1-202ENST00000527827 SLC41A3Q96GZ6 507 aa20.26■□□□□ 0.83
CPSF1-202ENST00000527827 LRR1Q96L50 414 aa20.26■□□□□ 0.83
CPSF1-202ENST00000527827 SYT3Q9BQG1 590 aa20.26■□□□□ 0.83
CPSF1-202ENST00000527827 PLA2G12AQ9BZM1 189 aa20.26■□□□□ 0.83
CPSF1-202ENST00000527827 PAIP1Q9H074 479 aaKnown RBP20.26■□□□□ 0.83
CPSF1-202ENST00000527827 CENPHQ9H3R5 247 aa20.26■□□□□ 0.83
CPSF1-202ENST00000527827 MS4A5Q9H3V2 200 aa20.26■□□□□ 0.83
CPSF1-202ENST00000527827 THAP1Q9NVV9 213 aa20.26■□□□□ 0.83
CPSF1-202ENST00000527827 A0A0A6YYJ9 748 aa20.25■□□□□ 0.83
CPSF1-202ENST00000527827 SLCO1B7G3V0H7 640 aa20.25■□□□□ 0.83
CPSF1-202ENST00000527827 HOXB9P17482 250 aaPredicted RBP20.25■□□□□ 0.83
CPSF1-202ENST00000527827 ALDH3B1P43353 468 aa20.25■□□□□ 0.83
CPSF1-202ENST00000527827 GPR6P46095 362 aaPredicted RBP20.25■□□□□ 0.83
CPSF1-202ENST00000527827 POLR2JP52435 117 aaKnown RBP20.25■□□□□ 0.83
CPSF1-202ENST00000527827 SEC24CP53992 1094 aa20.25■□□□□ 0.83
CPSF1-202ENST00000527827 AQP5P55064 265 aa20.25■□□□□ 0.83
CPSF1-202ENST00000527827 WDR4P57081 412 aaKnown RBP20.25■□□□□ 0.83
CPSF1-202ENST00000527827 FXNQ16595 210 aa20.25■□□□□ 0.83
CPSF1-202ENST00000527827 ZNF813Q6ZN06 617 aa20.25■□□□□ 0.83
CPSF1-202ENST00000527827 LRP11Q86VZ4 500 aa20.25■□□□□ 0.83
CPSF1-202ENST00000527827 DNAJA4Q8WW22 397 aaPredicted RBP20.25■□□□□ 0.83
CPSF1-202ENST00000527827 GTF2H4Q92759 462 aa20.25■□□□□ 0.83
CPSF1-202ENST00000527827 TXNDC15Q96J42 360 aa20.25■□□□□ 0.83
CPSF1-202ENST00000527827 NARFLQ9H6Q4 476 aa20.25■□□□□ 0.83
CPSF1-202ENST00000527827 HIF1ANQ9NWT6 349 aa20.25■□□□□ 0.83
CPSF1-202ENST00000527827 MED29Q9NX70 200 aa20.25■□□□□ 0.83
CPSF1-202ENST00000527827 MYEF2Q9P2K5 600 aaKnown RBP20.25■□□□□ 0.83
CPSF1-202ENST00000527827 SPEF1Q9Y4P9 236 aa20.25■□□□□ 0.83
CPSF1-202ENST00000527827 A0A087WUJ7 227 aa20.24■□□□□ 0.83
CPSF1-202ENST00000527827 CLIC1O00299 241 aa20.24■□□□□ 0.83
CPSF1-202ENST00000527827 WNT9BO14905 357 aa20.24■□□□□ 0.83
CPSF1-202ENST00000527827 PRKAR1BP31321 381 aa20.24■□□□□ 0.83
CPSF1-202ENST00000527827 MFSD13AQ14CX5 517 aa20.24■□□□□ 0.83
CPSF1-202ENST00000527827 MAD2L1BPQ15013 274 aaPredicted RBP20.24■□□□□ 0.83
CPSF1-202ENST00000527827 ALG10BQ5I7T1 473 aa20.24■□□□□ 0.83
CPSF1-202ENST00000527827 HHATQ5VTY9 493 aa20.24■□□□□ 0.83
CPSF1-202ENST00000527827 MAVSQ7Z434 540 aa20.24■□□□□ 0.83
CPSF1-202ENST00000527827 ANKRD42Q8N9B4 389 aa20.24■□□□□ 0.83
CPSF1-202ENST00000527827 OR6S1Q8NH40 331 aa20.24■□□□□ 0.83
CPSF1-202ENST00000527827 ZFAND2BQ8WV99 257 aa20.24■□□□□ 0.83
CPSF1-202ENST00000527827 YIPF5Q969M3 257 aa20.24■□□□□ 0.83
CPSF1-202ENST00000527827 TMEM186Q96B77 213 aa20.24■□□□□ 0.83
CPSF1-202ENST00000527827 BGLAPP02818 100 aa20.23■□□□□ 0.83
CPSF1-202ENST00000527827 ETS2P15036 469 aa20.23■□□□□ 0.83
CPSF1-202ENST00000527827 B4GALT1P15291 398 aa20.23■□□□□ 0.83
CPSF1-202ENST00000527827 NQO1P15559 274 aaKnown RBP20.23■□□□□ 0.83
CPSF1-202ENST00000527827 ACHEP22303 614 aa20.23■□□□□ 0.83
CPSF1-202ENST00000527827 PTDSS1P48651 473 aaKnown RBP20.23■□□□□ 0.83
CPSF1-202ENST00000527827 FADDQ13158 208 aa20.23■□□□□ 0.83
CPSF1-202ENST00000527827 TRMT5Q32P41 509 aaKnown RBP20.23■□□□□ 0.83
CPSF1-202ENST00000527827 RDH5Q92781 318 aa20.23■□□□□ 0.83
CPSF1-202ENST00000527827 OR52B2Q96RD2 323 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms