RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 CFHR1Q03591 330 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 MAB21L1Q13394 359 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 EFR3AQ14156 821 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 SGCBQ16585 318 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 Q499Y3 187 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 CCDC92Q53HC0 331 aaPredicted RBP13.48□□□□□ -0.25
NUP54-217ENST00000514987 MESTQ5EB52 335 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 VWA2Q5GFL6 755 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 LRRN1Q6UXK5 716 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 MARCH3Q86UD3 253 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 ASCC1Q8N9N2 400 aaKnown RBP13.48□□□□□ -0.25
NUP54-217ENST00000514987 OR6S1Q8NH40 331 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 STK35Q8TDR2 534 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 ASB17Q8WXJ9 295 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 YIPF5Q969M3 257 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 ZNF501Q96CX3 271 aaPredicted RBP13.48□□□□□ -0.25
NUP54-217ENST00000514987 INTS14Q96SY0 518 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 FOXQ1Q9C009 403 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 VN1R1Q9GZP7 353 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 COMMD4Q9H0A8 199 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 DUSP15Q9H1R2 295 aaPredicted RBP13.48□□□□□ -0.25
NUP54-217ENST00000514987 SRA1Q9HD15 236 aaKnown RBP13.48□□□□□ -0.25
NUP54-217ENST00000514987 FGF21Q9NSA1 209 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 ZNF346Q9UL40 294 aaKnown RBP13.48□□□□□ -0.25
NUP54-217ENST00000514987 MKL2Q9ULH7 1088 aa13.48□□□□□ -0.25
NUP54-217ENST00000514987 RBMX2Q9Y388 322 aaKnown RBP13.48□□□□□ -0.25
NUP54-217ENST00000514987 PCDHGA9Q9Y5G4 932 aaKnown RBP13.48□□□□□ -0.25
NUP54-217ENST00000514987 A0A1W2PPK0 400 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 OR6C70A6NIJ9 312 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 A8MVM7 634 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 FADS1O60427 444 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 UPK3AO75631 287 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 NUDT14O95848 222 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 C1QBP02746 253 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 RAB40ALP0C0E4 278 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 ABCD3P28288 659 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 MRPS10P82664 201 aaKnown RBP13.47□□□□□ -0.25
NUP54-217ENST00000514987 RASGEF1BQ0VAM2 473 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 SLC36A2Q495M3 483 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 FAM69AQ5T7M9 428 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 LIPNQ5VXI9 398 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 KRT74Q7RTS7 529 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 GRINAQ7Z429 371 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 RABEPKQ7Z6M1 372 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 RAB40AQ8WXH6 277 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 TMEM234Q8WY98 164 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 ACTR6Q9GZN1 396 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 TCF7L1Q9HCS4 588 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 MRPL39Q9NYK5 338 aaKnown RBP13.47□□□□□ -0.25
NUP54-217ENST00000514987 MRM2Q9UI43 246 aaKnown RBP13.47□□□□□ -0.25
NUP54-217ENST00000514987 ETV7Q9Y603 341 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 FKBP7Q9Y680 259 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 PCDH15Q96QU1 1955 aa13.47□□□□□ -0.25
NUP54-217ENST00000514987 TMED7-TICAM2A0A0A6YYA0 188 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 TRBV5-5A0A0J9YX44 114 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 TMEM212A6NML5 194 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 FAM171A2A8MVW0 826 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 PIN1P1O15428 100 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 ARHGEF9O43307 516 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 OR2T1O43869 369 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 ABHD16AO95870 558 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 ECDO95905 644 aaPredicted RBP13.46□□□□□ -0.25
NUP54-217ENST00000514987 OR8G3PP0DMU2 310 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 TFPIP10646 304 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 PNLIPP16233 465 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 ALOX5APP20292 161 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 CSF2RBP32927 897 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 SLC26A5P58743 744 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 AP3S2P59780 193 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 NANOS3P60323 173 aaKnown RBP13.46□□□□□ -0.25
NUP54-217ENST00000514987 FDX2Q6P4F2 183 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 GLCCI1Q86VQ1 547 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 PLCZ1Q86YW0 608 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 OR6V1Q8N148 313 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 SLC25A45Q8N413 288 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 Q8N9G6 341 aaPredicted RBP13.46□□□□□ -0.25
NUP54-217ENST00000514987 ZNF417Q8TAU3 575 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 LGALS14Q8TCE9 139 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 SMIM4Q8WVI0 70 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 METTL21AQ8WXB1 218 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 MAP6Q96JE9 813 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 PLEKHA1Q9HB21 404 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 TAS2R5Q9NYW4 299 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 TMED7Q9Y3B3 224 aa13.46□□□□□ -0.25
NUP54-217ENST00000514987 C7orf66A4D0T2 115 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 CENPBD1B2RD01 187 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 SUSD5O60279 629 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 NPIPB7O75200 414 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 DXOO77932 396 aaKnown RBP13.45□□□□□ -0.26
NUP54-217ENST00000514987 OR6A2O95222 327 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 IGHMP01871 453 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 EVI2BP34910 448 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 ARRB1P49407 418 aaPredicted RBP13.45□□□□□ -0.26
NUP54-217ENST00000514987 AGFG1P52594 562 aaKnown RBP13.45□□□□□ -0.26
NUP54-217ENST00000514987 SUMO3P55854 103 aaPredicted RBP13.45□□□□□ -0.26
NUP54-217ENST00000514987 RPL27P61353 136 aaKnown RBP13.45□□□□□ -0.26
NUP54-217ENST00000514987 ACY1Q03154 408 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 SQSTM1Q13501 440 aa13.45□□□□□ -0.26
NUP54-217ENST00000514987 LYPD4Q6UWN0 246 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms