RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 NBPF19A0A087WUL8 3843 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 NOTCH2Q04721 2471 aa12.6□□□□□ -0.39
NUP54-216ENST00000514901 TRBV4-1A0A0J9YWV2 114 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 A0A1W2PRG6 482 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 SH3PXD2BA1X283 911 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 C11orf98E9PRG8 122 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 PIP5K1CO60331 668 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 IGHV3-9P01782 118 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 HLA-DOBP13765 273 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 MAKP20794 623 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 IGHV1-2P23083 117 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 EDNRAP25101 427 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 MPGP29372 298 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 SELENOPP49908 381 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 PRPS1P60891 318 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 RPL18Q07020 188 aaKnown RBP12.59□□□□□ -0.39
NUP54-216ENST00000514901 FAPQ12884 760 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 SNTB1Q13884 538 aaKnown RBP12.59□□□□□ -0.39
NUP54-216ENST00000514901 C1QTNF12Q5T7M4 302 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 TSPO2Q5TGU0 170 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 OR7E24Q6IFN5 339 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 ASRGL1Q7L266 308 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 BHLHA15Q7RTS1 189 aaPredicted RBP12.59□□□□□ -0.39
NUP54-216ENST00000514901 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.59□□□□□ -0.39
NUP54-216ENST00000514901 HDDC2Q7Z4H3 204 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 OAFQ86UD1 273 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 ADGRG5Q8IZF4 528 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 ZNF433Q8N7K0 673 aaPredicted RBP12.59□□□□□ -0.39
NUP54-216ENST00000514901 OR4K5Q8NGD3 323 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 OR6X1Q8NH79 312 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 CANT1Q8WVQ1 401 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 HSD17B8Q92506 261 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 WFIKKN1Q96NZ8 548 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 FUZQ9BT04 418 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 CHID1Q9BWS9 393 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 ACTR6Q9GZN1 396 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 INIPQ9NRY2 104 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 SLC7A10Q9NS82 523 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.59□□□□□ -0.39
NUP54-216ENST00000514901 STX18Q9P2W9 335 aaKnown RBP12.59□□□□□ -0.39
NUP54-216ENST00000514901 AURKCQ9UQB9 309 aa12.59□□□□□ -0.39
NUP54-216ENST00000514901 TCRBV3S1A0A5B6 114 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 CIB4A0PJX0 185 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 SLC35F4A4IF30 521 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 NPIPB13A6NJU9 1138 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 NPIPB4C9JG80 1138 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 ZNF587BE7ETH6 402 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 PDLIM1O00151 329 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 TNFRSF11BO00300 401 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 CIB2O75838 187 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 BCL10O95999 233 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 IFNGR1P15260 489 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 DNAJA1P31689 397 aaKnown RBP12.58□□□□□ -0.4
NUP54-216ENST00000514901 CCKARP32238 428 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 AQP2P41181 271 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 OMPP47874 163 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 LSM11P83369 360 aaKnown RBP eCLIP12.58□□□□□ -0.4
NUP54-216ENST00000514901 LAPTM4AQ15012 233 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 SEC23BQ15437 767 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 ZBED5Q49AG3 693 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 OR2T5Q6IEZ7 315 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 SLC35D2Q76EJ3 337 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 ZNF295-AS1Q8N0V1 137 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 TMEM123Q8N131 208 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 GPR137CQ8N3F9 429 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 C1orf162Q8NEQ5 155 aaPredicted RBP12.58□□□□□ -0.4
NUP54-216ENST00000514901 OR2T29Q8NH02 315 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 OR2M2Q96R28 347 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 MCCC2Q9HCC0 563 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 B3GAT2Q9NPZ5 323 aa12.58□□□□□ -0.4
NUP54-216ENST00000514901 DCHS2Q6V1P9 2916 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 CENPBD1B2RD01 187 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 RPL36A-HNRNPH2H7BZ11 118 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 CLOCKO15516 846 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 OR10H3O60404 316 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 SERPINI2O75830 405 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 LYZL6O75951 148 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 GPR4P46093 362 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 LIMS1P48059 325 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 DAP3P51398 398 aaKnown RBP12.57□□□□□ -0.4
NUP54-216ENST00000514901 SH3BGRP55822 239 aaPredicted RBP12.57□□□□□ -0.4
NUP54-216ENST00000514901 BIDP55957 195 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 RPS4XP62701 263 aaKnown RBP12.57□□□□□ -0.4
NUP54-216ENST00000514901 ALG10Q5BKT4 473 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 TIMM23BQ5SRD1 257 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 C1orf146Q5VVC0 180 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 ANKRD34AQ69YU3 496 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 HMBOX1Q6NT76 420 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 C20orf196Q8IYI0 205 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 PAPD5Q8NDF8 572 aaKnown RBP12.57□□□□□ -0.4
NUP54-216ENST00000514901 OR51A7Q8NH64 312 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 S100PBPQ96BU1 408 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 SLC25A44Q96H78 314 aaPredicted RBP12.57□□□□□ -0.4
NUP54-216ENST00000514901 BOD1Q96IK1 185 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 FAM46AQ96IP4 442 aaKnown RBP12.57□□□□□ -0.4
NUP54-216ENST00000514901 TXNDC15Q96J42 360 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 MUS81Q96NY9 551 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 TNFRSF13CQ96RJ3 184 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 REEP1Q9H902 201 aa12.57□□□□□ -0.4
NUP54-216ENST00000514901 CCM2LQ9NUG4 571 aaPredicted RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms