RNA–Protein interactions for RNA: ENST00000513984.5

VCAN-211, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-211ENST00000513984 ARL9Q6T311 187 aa13.48□□□□□ -0.25
VCAN-211ENST00000513984 Q6ZNX1 250 aa13.48□□□□□ -0.25
VCAN-211ENST00000513984 SLC16A9Q7RTY1 509 aa13.48□□□□□ -0.25
VCAN-211ENST00000513984 OR6V1Q8N148 313 aa13.48□□□□□ -0.25
VCAN-211ENST00000513984 NEIL3Q8TAT5 605 aa13.48□□□□□ -0.25
VCAN-211ENST00000513984 POC1BQ8TC44 478 aa13.48□□□□□ -0.25
VCAN-211ENST00000513984 CHPT1Q8WUD6 406 aa13.48□□□□□ -0.25
VCAN-211ENST00000513984 ASB15Q8WXK1 588 aa13.48□□□□□ -0.25
VCAN-211ENST00000513984 NTNG2Q96CW9 530 aa13.48□□□□□ -0.25
VCAN-211ENST00000513984 PELI1Q96FA3 418 aa13.48□□□□□ -0.25
VCAN-211ENST00000513984 ARL5BQ96KC2 179 aa13.48□□□□□ -0.25
VCAN-211ENST00000513984 PGLYRP3Q96LB9 341 aa13.48□□□□□ -0.25
VCAN-211ENST00000513984 PLEKHB1Q9UF11 243 aaPredicted RBP13.48□□□□□ -0.25
VCAN-211ENST00000513984 PCSK5Q92824 1860 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 CD8B2A6NJW9 211 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 FAM171A2A8MVW0 826 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 C9orf172C9J069 976 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 OGG1O15527 345 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 ARHGEF9O43307 516 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 TRIM3O75382 744 aaPredicted RBP13.47□□□□□ -0.25
VCAN-211ENST00000513984 OR6A2O95222 327 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 CD8BP10966 210 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 AHCYP23526 432 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 F8A1P23610 371 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 ACVR1BP36896 505 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 SSR4P51571 173 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 CLDN6P56747 220 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 MLF1P58340 268 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 RPS18P62269 152 aaKnown RBP13.47□□□□□ -0.25
VCAN-211ENST00000513984 IFITM3Q01628 133 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 INSL4Q14641 139 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 RGS21Q2M5E4 152 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 IL20RBQ6UXL0 311 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 TIGD4Q8IY51 512 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 PARP16Q8N5Y8 322 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 WDSUB1Q8N9V3 476 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 ZNF511Q8NB15 262 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 SNX33Q8WV41 574 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 THAP4Q8WY91 577 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 WDFY2Q96P53 400 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 TTTY10Q9BZA0 68 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 SYT4Q9H2B2 425 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 SRA1Q9HD15 236 aaKnown RBP13.47□□□□□ -0.25
VCAN-211ENST00000513984 SH2D2AQ9NP31 389 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 FBXL2Q9UKC9 423 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 PCDHGA1Q9Y5H4 931 aa13.47□□□□□ -0.25
VCAN-211ENST00000513984 CACNA1HO95180 2353 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 FREM3P0C091 2139 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 CCDC187A0A096LP49 1063 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 A0A1W2PNU3 283 aaPredicted RBP13.46□□□□□ -0.25
VCAN-211ENST00000513984 SHISA3A0PJX4 238 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 PRSS37A4D1T9 235 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 EFNA2O43921 213 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 SC5DO75845 299 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 CD1AP06126 327 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 TGM4P49221 684 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 GBX2P52951 348 aaPredicted RBP13.46□□□□□ -0.25
VCAN-211ENST00000513984 PUDPQ08623 228 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 EIF3IQ13347 325 aaKnown RBP13.46□□□□□ -0.25
VCAN-211ENST00000513984 SSPNQ14714 243 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 CDK5R1Q15078 307 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 INPP5JQ15735 1006 aaPredicted RBP13.46□□□□□ -0.25
VCAN-211ENST00000513984 SPANXN2Q5MJ10 180 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 ZNF684Q5T5D7 378 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 RPTNQ6XPR3 784 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 RPS19BP1Q86WX3 136 aaKnown RBP13.46□□□□□ -0.25
VCAN-211ENST00000513984 EGFL6Q8IUX8 553 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 PM20D2Q8IYS1 436 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 SUMF1Q8NBK3 374 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 CDCP1Q9H5V8 836 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 MARCH7Q9H992 704 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 VSX1Q9NZR4 365 aaPredicted RBP13.46□□□□□ -0.25
VCAN-211ENST00000513984 GRIP1Q9Y3R0 1128 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 FKBP7Q9Y680 259 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 KIAA1549Q9HCM3 1950 aa13.46□□□□□ -0.25
VCAN-211ENST00000513984 SLC35F4A4IF30 521 aa13.46□□□□□ -0.26
VCAN-211ENST00000513984 NPIPB13A6NJU9 1138 aa13.46□□□□□ -0.26
VCAN-211ENST00000513984 LIPT2A6NK58 231 aa13.46□□□□□ -0.26
VCAN-211ENST00000513984 SHISA8B8ZZ34 492 aa13.46□□□□□ -0.26
VCAN-211ENST00000513984 NPIPB4C9JG80 1138 aa13.46□□□□□ -0.26
VCAN-211ENST00000513984 MS4A18H0YCH9 400 aa13.46□□□□□ -0.26
VCAN-211ENST00000513984 CASKO14936 926 aa13.46□□□□□ -0.26
VCAN-211ENST00000513984 MT-CO3P00414 261 aa13.46□□□□□ -0.26
VCAN-211ENST00000513984 PLGP00747 810 aaPredicted RBP13.46□□□□□ -0.26
VCAN-211ENST00000513984 IMPDH2P12268 514 aa13.46□□□□□ -0.26
VCAN-211ENST00000513984 ICAM2P13598 275 aa13.46□□□□□ -0.26
VCAN-211ENST00000513984 IL11P20809 199 aa13.46□□□□□ -0.26
VCAN-211ENST00000513984 GTF2E2P29084 291 aaKnown RBP13.46□□□□□ -0.26
VCAN-211ENST00000513984 CHAF1BQ13112 559 aa13.46□□□□□ -0.26
VCAN-211ENST00000513984 OR7A5Q15622 319 aa13.46□□□□□ -0.26
VCAN-211ENST00000513984 MS4A18Q3C1V0 323 aa13.46□□□□□ -0.26
VCAN-211ENST00000513984 CCDC58Q4VC31 144 aa13.46□□□□□ -0.26
VCAN-211ENST00000513984 PRAMEF20Q5VT98 475 aa13.46□□□□□ -0.26
VCAN-211ENST00000513984 C3orf33Q6P1S2 294 aa13.46□□□□□ -0.26
VCAN-211ENST00000513984 DCDC5Q6ZRR9 648 aa13.46□□□□□ -0.26
VCAN-211ENST00000513984 H1FNTQ75WM6 255 aaPredicted RBP13.46□□□□□ -0.26
VCAN-211ENST00000513984 CDC20BQ86Y33 519 aa13.46□□□□□ -0.26
VCAN-211ENST00000513984 MS4A15Q8N5U1 240 aa13.46□□□□□ -0.26
VCAN-211ENST00000513984 OR4K17Q8NGC6 315 aa13.46□□□□□ -0.26
VCAN-211ENST00000513984 RPS4Y2Q8TD47 263 aa13.46□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms