RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 PRICKLE3O43900 615 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 GABRB1P18505 474 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 IL3RAP26951 378 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 PPP1CBP62140 327 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 RPS21P63220 83 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 FAM110CQ1W6H9 321 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 OR10D4PQ8NGN7 298 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 IFI44Q8TCB0 444 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 BLNKQ8WV28 456 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 C12orf42Q96LP6 360 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 WDR92Q96MX6 357 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 FYTTD1Q96QD9 318 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 PIGQQ9BRB3 760 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 EDEM2Q9BV94 578 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 RBM24Q9BX46 236 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 JAM3Q9BX67 310 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 RNF208Q9H0X6 261 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 PREX2Q70Z35 1606 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 ZCWPW2A0A1B0GU75 182 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 PHF1O43189 567 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 PEX10O60683 326 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 USP2O75604 605 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 ID2Q02363 134 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 MBTPS1Q14703 1052 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 GGNBP1Q5YKI7 109 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 Q6ZVL8 140 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 HSD17B13Q7Z5P4 300 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 CCNL2Q96S94 520 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 CDCA4Q9BXL8 241 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 WDR76Q9H967 626 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 HEYLQ9NQ87 328 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 FLVCR2Q9UPI3 526 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 CSAG2Q9Y5P2 127 aa10.44□□□□□ -0.74
LIMCH1-217ENST00000512946 A6NDN8 102 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 HOXC11O43248 304 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 SDHBP21912 280 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 PLCXD3Q63HM9 321 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 IL20RBQ6UXL0 311 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 OR51A2Q8NGJ7 313 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 FBXO27Q8NI29 283 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 TMED6Q8WW62 240 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 APIPQ96GX9 242 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 PDLIM5Q96HC4 596 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 ATG101Q9BSB4 218 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 CREBZFQ9NS37 354 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 OR14J1Q9UGF5 321 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 VWDEQ8N2E2 1590 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 I6L893 689 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 MSX1P28360 303 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 BLVRBP30043 206 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 HTR6P50406 440 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 CASP6P55212 293 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 TSTD1Q8NFU3 115 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 LKAAEAR1Q8TD35 194 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 TTC9Q92623 222 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 FOXJ1Q92949 421 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 TMEM106AQ96A25 262 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 NOL4LQ96MY1 436 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 CPPED1Q9BRF8 314 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 MMP26Q9NRE1 261 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 NDRG2Q9UN36 371 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 LAMP3Q9UQV4 416 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 TNFSF12-TNFSF13A0A0A6YY99 330 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 ZNF320A2RRD8 509 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 F5H5K5 113 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 H0Y8G0 127 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 TNFSF12O43508 249 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 HNRNPA2B1P22626 353 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 ALKBH1Q13686 389 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 SPRED3Q2MJR0 410 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 GGTA1PQ4G0N0 100 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 WDR73Q6P4I2 378 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 DPPA4Q7L190 304 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 RAB24Q969Q5 203 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 ZNF845Q96IR2 970 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 FBXL12Q9NXK8 326 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 TAS2R5Q9NYW4 299 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 POMT2Q9UKY4 750 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 GPR55Q9Y2T6 319 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 CNMDO75829 334 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 ZIC2O95409 532 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 RPLP1P05386 114 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 DBHP09172 617 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 F3P13726 295 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 MPGP29372 298 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 RPL12P30050 165 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 AMTP48728 403 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 SLC10A2Q12908 348 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 PDE7AQ13946 482 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 SIX1Q15475 284 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 ETFDHQ16134 617 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 OR2G6Q5TZ20 316 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 TMEM71Q6P5X7 295 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 BTNL3Q6UXE8 466 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 RANBP10Q6VN20 620 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 SLC35G3Q8N808 338 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 OR4F15Q8NGB8 312 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 IL1F10Q8WWZ1 152 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 C20orf24Q9BUV8 137 aa10.43□□□□□ -0.74
LIMCH1-217ENST00000512946 A0A087X0M5 115 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms