RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 HSD17B12Q53GQ0 312 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 ZNF385BQ569K4 471 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 GLYATQ6IB77 296 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 MFSD12Q6NUT3 480 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 SHQ1Q6PI26 577 aaKnown RBP7.21□□□□□ -1.26
SCN1A-207ENST00000507401 APOOLQ6UXV4 268 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 PIWIL3Q7Z3Z3 882 aaKnown RBP7.21□□□□□ -1.26
SCN1A-207ENST00000507401 MARCH3Q86UD3 253 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 RNF130Q86XS8 419 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 KRTAP1-3Q8IUG1 177 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 MISPQ8IVT2 679 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 ZZZ3Q8IYH5 903 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 GLB1L3Q8NCI6 653 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-207ENST00000507401 SLC16A11Q8NCK7 471 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 OR4C3Q8NH37 302 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 NDNFQ8TB73 568 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 AGR3Q8TD06 166 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 NINJ1Q92982 152 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 MOAP1Q96BY2 351 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 INTS12Q96CB8 462 aaKnown RBP7.21□□□□□ -1.26
SCN1A-207ENST00000507401 C1GALT1C1Q96EU7 318 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 C16orf58Q96GQ5 468 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 ZC3HAV1LQ96H79 300 aaKnown RBP7.21□□□□□ -1.26
SCN1A-207ENST00000507401 TMEM80Q96HE8 168 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 MEGF10Q96KG7 1140 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 HYLS1Q96M11 299 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 C3orf30Q96M34 536 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 MS4A4EQ96PG1 132 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 SIGLEC11Q96RL6 698 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 STACQ99469 402 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 RTN4RQ9BZR6 473 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 CCDC90BQ9GZT6 254 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 PIGUQ9H490 435 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 AKTIPQ9H8T0 292 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 NTN4Q9HB63 628 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 ZC4H2Q9NQZ6 224 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 UBQLN4Q9NRR5 601 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 DUSP22Q9NRW4 184 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 RASSF1Q9NS23 344 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 PAQR5Q9NXK6 330 aaPredicted RBP7.21□□□□□ -1.26
SCN1A-207ENST00000507401 ASIC5Q9NY37 505 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 CRIM1Q9NZV1 1036 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 EIF3KQ9UBQ5 218 aaKnown RBP7.21□□□□□ -1.26
SCN1A-207ENST00000507401 ZNF337Q9Y3M9 751 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 PCNX3Q9H6A9 2034 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 MED12LQ86YW9 2145 aa7.21□□□□□ -1.26
SCN1A-207ENST00000507401 MED12Q93074 2177 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 MPDZO75970 2070 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 HIVEP1P15822 2718 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 A0A1W2PQD3 144 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 MEIOCA2RUB1 952 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 OR2M5A3KFT3 312 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 A6NNC1 897 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 CYP7B1O75881 506 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 OR7A10O76100 309 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 TGM6O95932 706 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 CST1P01037 141 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 IGKV1D-16P01601 117 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 HMGN2P05204 90 aaKnown RBP7.2□□□□□ -1.26
SCN1A-207ENST00000507401 DNAJA1P31689 397 aaKnown RBP7.2□□□□□ -1.26
SCN1A-207ENST00000507401 HTR2BP41595 481 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 YAP1P46937 504 aaKnown RBP7.2□□□□□ -1.26
SCN1A-207ENST00000507401 CCT3P49368 545 aaKnown RBP7.2□□□□□ -1.26
SCN1A-207ENST00000507401 AGFG1P52594 562 aaKnown RBP7.2□□□□□ -1.26
SCN1A-207ENST00000507401 CLDN15P56746 228 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 CLDN8P56748 225 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 FOXF2Q12947 444 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 PTGR1Q14914 329 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 DUSP5Q16690 384 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 DPY19L1Q2PZI1 675 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 TBRG1Q3YBR2 411 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 OTUD3Q5T2D3 398 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-207ENST00000507401 MZT2BQ6NZ67 158 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 BHLHB9Q6PI77 547 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 ZNF367Q7RTV3 350 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 CAMKMTQ7Z624 323 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 LUZP2Q86TE4 346 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 TMEM200AQ86VY9 491 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 RDH10Q8IZV5 341 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 FNDC5Q8NAU1 212 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 OR56A1Q8NGH5 318 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 OR5H6Q8NGV6 325 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 OR10Z1Q8NGY1 313 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 CLHC1Q8NHS4 586 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 LRRC20Q8TCA0 184 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 SLC9A6Q92581 669 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 TUBGCP3Q96CW5 907 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 FAM120BQ96EK7 910 aaKnown RBP7.2□□□□□ -1.26
SCN1A-207ENST00000507401 RNF170Q96K19 258 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 MBOAT4Q96T53 435 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 PITX2Q99697 317 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 POLDIP3Q9BY77 421 aaKnown RBP7.2□□□□□ -1.26
SCN1A-207ENST00000507401 ACTRT3Q9BYD9 372 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 BHLHE41Q9C0J9 482 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-207ENST00000507401 SRA1Q9HD15 236 aaKnown RBP7.2□□□□□ -1.26
SCN1A-207ENST00000507401 EQTNQ9NQ60 294 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 SIRT3Q9NTG7 399 aaPredicted RBP7.2□□□□□ -1.26
SCN1A-207ENST00000507401 ZCCHC3Q9NUD5 404 aaKnown RBP7.2□□□□□ -1.26
SCN1A-207ENST00000507401 AIG1Q9NVV5 245 aa7.2□□□□□ -1.26
SCN1A-207ENST00000507401 FLRT3Q9NZU0 649 aa7.2□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms