RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP18.18■□□□□ 0.55e-7■□□□□ 11
SQSTM1-210ENST00000506042 SLC22A23A1A5C7 686 aa18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 M0R082 166 aa18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 M0R3G1 203 aa18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 LILRA1O75019 489 aa18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 UBL3O95164 117 aa18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 PRG2P13727 222 aa18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 ACHEP22303 614 aa18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 NR4A1P22736 598 aa18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 IL12AP29459 219 aa18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 POLR2JP52435 117 aaKnown RBP18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 MMEL1Q495T6 779 aa18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 RPS26P11Q5JNZ5 115 aaPredicted RBP18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 ZNF813Q6ZN06 617 aa18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 RINLQ6ZS11 566 aa18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 KDM8Q8N371 416 aa18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 LSMEM1Q8N8F7 131 aa18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 ZNF417Q8TAU3 575 aa18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 MRPL24Q96A35 216 aaKnown RBP18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 OR2M2Q96R28 347 aa18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 JMJD8Q96S16 334 aa18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 ZNF607Q96SK3 696 aa18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 ZNF587Q96SQ5 575 aaPredicted RBP18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 ULBP2Q9BZM5 246 aa18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 WDR55Q9H6Y2 383 aaPredicted RBP18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 TESQ9UGI8 421 aaKnown RBP18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 CORO2BQ9UQ03 480 aa18.18■□□□□ 0.5
SQSTM1-210ENST00000506042 UBDO15205 165 aa18.17■□□□□ 0.5
SQSTM1-210ENST00000506042 MT-ND5P03915 603 aa18.17■□□□□ 0.5
SQSTM1-210ENST00000506042 KITP10721 976 aa18.17■□□□□ 0.5
SQSTM1-210ENST00000506042 GRPRP30550 384 aa18.17■□□□□ 0.5
SQSTM1-210ENST00000506042 GLRXP35754 106 aa18.17■□□□□ 0.5
SQSTM1-210ENST00000506042 RIN1Q13671 783 aa18.17■□□□□ 0.5
SQSTM1-210ENST00000506042 CEP85LQ5SZL2 805 aa18.17■□□□□ 0.5
SQSTM1-210ENST00000506042 LINGO2Q7L985 606 aa18.17■□□□□ 0.5
SQSTM1-210ENST00000506042 RANBP3LQ86VV4 465 aaPredicted RBP18.17■□□□□ 0.5
SQSTM1-210ENST00000506042 C10orf53Q8N6V4 93 aa18.17■□□□□ 0.5
SQSTM1-210ENST00000506042 ANKRD42Q8N9B4 389 aa18.17■□□□□ 0.5
SQSTM1-210ENST00000506042 RDH5Q92781 318 aa18.17■□□□□ 0.5
SQSTM1-210ENST00000506042 KTI12Q96EK9 354 aaPredicted RBP18.17■□□□□ 0.5
SQSTM1-210ENST00000506042 NELFAQ9H3P2 528 aa18.17■□□□□ 0.5
SQSTM1-210ENST00000506042 NKIRAS1Q9NYS0 192 aa18.17■□□□□ 0.5
SQSTM1-210ENST00000506042 SLC7A8Q9UHI5 535 aa18.17■□□□□ 0.5
SQSTM1-210ENST00000506042 CLIC1O00299 241 aa18.16■□□□□ 0.5
SQSTM1-210ENST00000506042 SERPINB7O75635 380 aa18.16■□□□□ 0.5
SQSTM1-210ENST00000506042 OR6A2O95222 327 aa18.16■□□□□ 0.5
SQSTM1-210ENST00000506042 CELA3BP08861 270 aa18.16■□□□□ 0.5
SQSTM1-210ENST00000506042 SAGP10523 405 aaPredicted RBP18.16■□□□□ 0.5
SQSTM1-210ENST00000506042 ITGA2P17301 1181 aa18.16■□□□□ 0.5
SQSTM1-210ENST00000506042 TMEM33P57088 247 aa18.16■□□□□ 0.5
SQSTM1-210ENST00000506042 MRPS11P82912 194 aaKnown RBP18.16■□□□□ 0.5
SQSTM1-210ENST00000506042 PMS2P3Q13401 168 aa18.16■□□□□ 0.5
SQSTM1-210ENST00000506042 CAMK2DQ13557 499 aa18.16■□□□□ 0.5
SQSTM1-210ENST00000506042 RGNQ15493 299 aa18.16■□□□□ 0.5
SQSTM1-210ENST00000506042 MOGQ16653 247 aa18.16■□□□□ 0.5
SQSTM1-210ENST00000506042 CDK20Q8IZL9 346 aa18.16■□□□□ 0.5
SQSTM1-210ENST00000506042 OR51F2Q8NH61 342 aa18.16■□□□□ 0.5
SQSTM1-210ENST00000506042 SNX33Q8WV41 574 aa18.16■□□□□ 0.5
SQSTM1-210ENST00000506042 C1orf159Q96HA4 380 aa18.16■□□□□ 0.5
SQSTM1-210ENST00000506042 PTDSS2Q9BVG9 487 aa18.16■□□□□ 0.5
SQSTM1-210ENST00000506042 TPK1Q9H3S4 243 aa18.16■□□□□ 0.5
SQSTM1-210ENST00000506042 C1orf198Q9H425 327 aa18.16■□□□□ 0.5
SQSTM1-210ENST00000506042 ZNF385DQ9H6B1 395 aa18.16■□□□□ 0.5
SQSTM1-210ENST00000506042 SDR39U1Q9NRG7 319 aaPredicted RBP18.16■□□□□ 0.5
SQSTM1-210ENST00000506042 A0A1W2PPW3 197 aa18.15■□□□□ 0.5
SQSTM1-210ENST00000506042 FARS2O95363 451 aaKnown RBP18.15■□□□□ 0.5
SQSTM1-210ENST00000506042 PTHP01270 115 aa18.15■□□□□ 0.5
SQSTM1-210ENST00000506042 PTDSS1P48651 473 aaKnown RBP18.15■□□□□ 0.5
SQSTM1-210ENST00000506042 MVDP53602 400 aa18.15■□□□□ 0.5
SQSTM1-210ENST00000506042 ACTG1P63261 375 aa18.15■□□□□ 0.5
SQSTM1-210ENST00000506042 TEKQ02763 1124 aa18.15■□□□□ 0.5
SQSTM1-210ENST00000506042 PUDPQ08623 228 aa18.15■□□□□ 0.5
SQSTM1-210ENST00000506042 CCNIQ14094 377 aa18.15■□□□□ 0.5
SQSTM1-210ENST00000506042 SWT1Q5T5J6 900 aaKnown RBP18.15■□□□□ 0.5
SQSTM1-210ENST00000506042 CARD17Q5XLA6 110 aa18.15■□□□□ 0.5
SQSTM1-210ENST00000506042 REEP3Q6NUK4 255 aa18.15■□□□□ 0.5
SQSTM1-210ENST00000506042 DPPA2Q7Z7J5 298 aa18.15■□□□□ 0.5
SQSTM1-210ENST00000506042 C20orf196Q8IYI0 205 aa18.15■□□□□ 0.5
SQSTM1-210ENST00000506042 FZD7O75084 574 aa18.14■□□□□ 0.49
SQSTM1-210ENST00000506042 MT-ATP6P00846 226 aa18.14■□□□□ 0.49
SQSTM1-210ENST00000506042 MSMBP08118 114 aa18.14■□□□□ 0.49
SQSTM1-210ENST00000506042 RGS8P57771 180 aaPredicted RBP18.14■□□□□ 0.49
SQSTM1-210ENST00000506042 EGR4Q05215 589 aa18.14■□□□□ 0.49
SQSTM1-210ENST00000506042 MAPK11Q15759 364 aa18.14■□□□□ 0.49
SQSTM1-210ENST00000506042 DEF8Q6ZN54 512 aa18.14■□□□□ 0.49
SQSTM1-210ENST00000506042 TMEM123Q8N131 208 aa18.14■□□□□ 0.49
SQSTM1-210ENST00000506042 TAAR8Q969N4 342 aa18.14■□□□□ 0.49
SQSTM1-210ENST00000506042 TMEM186Q96B77 213 aa18.14■□□□□ 0.49
SQSTM1-210ENST00000506042 LRMDAQ9H2I8 198 aa18.14■□□□□ 0.49
SQSTM1-210ENST00000506042 METTL17Q9H7H0 456 aaPredicted RBP18.14■□□□□ 0.49
SQSTM1-210ENST00000506042 SEC61A2Q9H9S3 476 aa18.14■□□□□ 0.49
SQSTM1-210ENST00000506042 B3GAT1Q9P2W7 334 aa18.14■□□□□ 0.49
SQSTM1-210ENST00000506042 A0A087WUJ7 227 aa18.13■□□□□ 0.49
SQSTM1-210ENST00000506042 TRAV20A0A0B4J274 112 aa18.13■□□□□ 0.49
SQSTM1-210ENST00000506042 A0A1B0GWA3 101 aa18.13■□□□□ 0.49
SQSTM1-210ENST00000506042 EVPLLA8MZ36 301 aa18.13■□□□□ 0.49
SQSTM1-210ENST00000506042 TRAF3IP2O43734 574 aaPredicted RBP18.13■□□□□ 0.49
SQSTM1-210ENST00000506042 HLA-HP01893 362 aa18.13■□□□□ 0.49
SQSTM1-210ENST00000506042 C1QCP02747 245 aa18.13■□□□□ 0.49
SQSTM1-210ENST00000506042 BMP2P12643 396 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms