RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-212ENST00000496458 POU3F4P49335 361 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 CSNK1EP49674 416 aaKnown RBP3.79□□□□□ -1.8
SF3B1-212ENST00000496458 RGS8P57771 180 aaPredicted RBP3.79□□□□□ -1.8
SF3B1-212ENST00000496458 YWHAGP61981 247 aaKnown RBP eCLIP3.79□□□□□ -1.8
SF3B1-212ENST00000496458 CKAP4Q07065 602 aaKnown RBP3.79□□□□□ -1.8
SF3B1-212ENST00000496458 BNIP1Q12981 228 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 XRCC4Q13426 336 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 COTL1Q14019 142 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 CCDC14Q49A88 953 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 ACSF3Q4G176 576 aaPredicted RBP3.79□□□□□ -1.8
SF3B1-212ENST00000496458 C6orf226Q5I0X4 101 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 PLCXD3Q63HM9 321 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 TMEM220Q6QAJ8 160 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 CWC27Q6UX04 472 aaKnown RBP3.79□□□□□ -1.8
SF3B1-212ENST00000496458 SCARA5Q6ZMJ2 495 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 EIF3MQ7L2H7 374 aaKnown RBP3.79□□□□□ -1.8
SF3B1-212ENST00000496458 NLRP9Q7RTR0 991 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 DEFB132Q7Z7B7 95 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 VTCN1Q7Z7D3 282 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 TMEM123Q8N131 208 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 C14orf178Q8N769 122 aaPredicted RBP3.79□□□□□ -1.8
SF3B1-212ENST00000496458 OR5AU1Q8NGC0 362 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 OR4K14Q8NGD5 310 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 SETD7Q8WTS6 366 aaKnown RBP3.79□□□□□ -1.8
SF3B1-212ENST00000496458 RPL3LQ92901 407 aaKnown RBP3.79□□□□□ -1.8
SF3B1-212ENST00000496458 CIDECQ96AQ7 238 aaPredicted RBP3.79□□□□□ -1.8
SF3B1-212ENST00000496458 SLC25A36Q96CQ1 311 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 C16orf74Q96GX8 76 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 TSNARE1Q96NA8 513 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 TGM7Q96PF1 710 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 DEFB118Q96PH6 123 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 TECTBQ96PL2 329 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 TGS1Q96RS0 853 aaKnown RBP3.79□□□□□ -1.8
SF3B1-212ENST00000496458 LLPHQ9BRT6 129 aaKnown RBP3.79□□□□□ -1.8
SF3B1-212ENST00000496458 C19orf24Q9BVV8 132 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 PARD6BQ9BYG5 372 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 NLNQ9BYT8 704 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 UPF3BQ9BZI7 483 aaKnown RBP3.79□□□□□ -1.8
SF3B1-212ENST00000496458 NMUR2Q9GZQ4 415 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 OPN3Q9H1Y3 402 aaPredicted RBP3.79□□□□□ -1.8
SF3B1-212ENST00000496458 DHX33Q9H6R0 707 aaKnown RBP3.79□□□□□ -1.8
SF3B1-212ENST00000496458 MCCC2Q9HCC0 563 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 RAB18Q9NP72 206 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 IL26Q9NPH9 171 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 TUBG2Q9NRH3 451 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 UFSP2Q9NUQ7 469 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 MRPL22Q9NWU5 206 aaKnown RBP3.79□□□□□ -1.8
SF3B1-212ENST00000496458 MIOXQ9UGB7 285 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 TBC1D24Q9ULP9 559 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 RPH3ALQ9UNE2 315 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 ZNF175Q9Y473 711 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 FLVCR1Q9Y5Y0 555 aa3.79□□□□□ -1.8
SF3B1-212ENST00000496458 KIF24Q5T7B8 1368 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 THSD7AQ9UPZ6 1657 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 ESYT2A0FGR8 921 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 FAM231BA6NCW3 169 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 IQCF5A8MTL0 148 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 H3BTX0 84 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 BTN3A3O00478 584 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 BIRC5O15392 142 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 STX7O15400 261 aaKnown RBP3.78□□□□□ -1.8
SF3B1-212ENST00000496458 NBR2O15453 112 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 CYTH3O43739 400 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 MGRN1O60291 552 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 SERF1AO75920 110 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 CLPXO76031 633 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 GSTA1P08263 222 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 STAG3L2P0CL84 134 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 MCF2P10911 925 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 UQCRBP14927 111 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 PTNP21246 168 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 IGHV1-2P23083 117 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 LAP3P28838 519 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 OTX1P32242 354 aaPredicted RBP3.78□□□□□ -1.8
SF3B1-212ENST00000496458 S100A5P33763 92 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 HTR2BP41595 481 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 NPY2RP49146 381 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 ZNF133P52736 654 aaPredicted RBP3.78□□□□□ -1.8
SF3B1-212ENST00000496458 WNT4P56705 351 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 DAOAP59103 153 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 HERVK_113P63132 956 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 ERVK-8P63133 956 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 BDH1Q02338 343 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 PPIL2Q13356 520 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 ALKBH6Q3KRA9 238 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 WSCD1Q658N2 575 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 THOC7Q6I9Y2 204 aaKnown RBP3.78□□□□□ -1.8
SF3B1-212ENST00000496458 PRR5LQ6MZQ0 368 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 RNASEKQ6P5S7 137 aaKnown RBP3.78□□□□□ -1.8
SF3B1-212ENST00000496458 LINC00523Q86TU6 105 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 PARGQ86W56 976 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 TGIF2LXQ8IUE1 241 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 MICU2Q8IYU8 434 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 MCOLN2Q8IZK6 566 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 ASCC1Q8N9N2 400 aaKnown RBP3.78□□□□□ -1.8
SF3B1-212ENST00000496458 FAM83FQ8NEG4 500 aaPredicted RBP3.78□□□□□ -1.8
SF3B1-212ENST00000496458 WDR36Q8NI36 951 aaKnown RBP3.78□□□□□ -1.8
SF3B1-212ENST00000496458 ACMSDQ8TDX5 336 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 GPX8Q8TED1 209 aa3.78□□□□□ -1.8
SF3B1-212ENST00000496458 SCFD1Q8WVM8 642 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms