RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 DNAAF1Q8NEP3 725 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 NTNG1Q9Y2I2 539 aa15.03■□□□□ -0
CCDC88B-209ENST00000494080 RPH3AQ9Y2J0 694 aaPredicted RBP15.03■□□□□ -0
CCDC88B-209ENST00000494080 A0A0B4J203 849 aa15.02■□□□□ -0
CCDC88B-209ENST00000494080 DCDC2BA2VCK2 349 aa15.02■□□□□ -0
CCDC88B-209ENST00000494080 HLA-AP01891 365 aaKnown RBP15.02■□□□□ -0
CCDC88B-209ENST00000494080 PNMTP11086 282 aa15.02■□□□□ -0
CCDC88B-209ENST00000494080 CBR1P16152 277 aa15.02■□□□□ -0
CCDC88B-209ENST00000494080 MAP2K6P52564 334 aa15.02■□□□□ -0
CCDC88B-209ENST00000494080 VASNQ6EMK4 673 aa15.02■□□□□ -0
CCDC88B-209ENST00000494080 ZNF595Q8IYB9 648 aa15.02■□□□□ -0
CCDC88B-209ENST00000494080 HLA-CQ95604 372 aa15.02■□□□□ -0
CCDC88B-209ENST00000494080 SLC38A1Q9H2H9 487 aa15.02■□□□□ -0
CCDC88B-209ENST00000494080 SLC6A20Q9NP91 592 aa15.02■□□□□ -0
CCDC88B-209ENST00000494080 SNRNP70P08621 437 aaKnown RBP15.02■□□□□ -0
CCDC88B-209ENST00000494080 OTX2P32243 289 aa15.02■□□□□ -0
CCDC88B-209ENST00000494080 IL13RA1P78552 427 aa15.02■□□□□ -0
CCDC88B-209ENST00000494080 LTBQ06643 244 aa15.02■□□□□ -0
CCDC88B-209ENST00000494080 ZNF79Q15937 498 aa15.02■□□□□ -0
CCDC88B-209ENST00000494080 GXYLT1Q4G148 440 aa15.02■□□□□ -0
CCDC88B-209ENST00000494080 GDF7Q7Z4P5 450 aa15.02■□□□□ -0
CCDC88B-209ENST00000494080 OR52I2Q8NH67 350 aa15.02■□□□□ -0
CCDC88B-209ENST00000494080 ARHGAP9Q9BRR9 750 aa15.02■□□□□ -0
CCDC88B-209ENST00000494080 BARHL1Q9BZE3 327 aa15.02■□□□□ -0
CCDC88B-209ENST00000494080 CRISPLD2Q9H0B8 497 aa15.02■□□□□ -0
CCDC88B-209ENST00000494080 UBQLN3Q9H347 655 aa15.02■□□□□ -0
CCDC88B-209ENST00000494080 NCDNQ9UBB6 729 aa15.02■□□□□ -0
CCDC88B-209ENST00000494080 C14orf166Q9Y224 244 aaKnown RBP15.02■□□□□ -0
CCDC88B-209ENST00000494080 PLA2G10O15496 165 aa15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 TSPAN15O95858 294 aa15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 GIPP09681 153 aaPredicted RBP15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 ST6GAL1P15907 406 aa15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 POU3F3P20264 500 aaPredicted RBP15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 RIDAP52758 137 aaKnown RBP15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 TLE3Q04726 772 aa15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 CRMP1Q14194 572 aa15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 UNQ6126/PRO20091Q6UXV3 157 aa15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 MRI1Q9BV20 369 aa15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 NRSN2Q9GZP1 204 aa15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 SEMA6CQ9H3T2 930 aa15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 C12orf10Q9HB07 376 aa15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 TESQ9UGI8 421 aaKnown RBP15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 AHCTF1Q8WYP5 2266 aa15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 A0A1B0GWA3 101 aa15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 ZC3H12DA2A288 527 aaKnown RBP15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 NR2C1P13056 603 aa15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 RAD52P43351 418 aa15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 UBE2MP61081 183 aaKnown RBP15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 SQSTM1Q13501 440 aa15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 CD163Q86VB7 1156 aa15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 CCDC71Q8IV32 467 aaPredicted RBP15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 ZNF547Q8IVP9 402 aa15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 ZNF649Q9BS31 505 aa15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 TEX101Q9BY14 249 aa15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 OR10A5Q9H207 317 aa15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 FGF21Q9NSA1 209 aa15.02□□□□□ -0.01
CCDC88B-209ENST00000494080 OR5K3A6NET4 321 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 NPIPA2E9PIF3 369 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 NPIPA3F8WFD2 350 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 SYT5O00445 386 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 LGI1O95970 557 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 SOD1P00441 154 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 SIRPAP78324 504 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 C1orf53Q5VUE5 145 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 FAAP20Q6NZ36 180 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 FAM122BQ7Z309 247 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 RSPRY1Q96DX4 576 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 CNRIP1Q96F85 164 aaPredicted RBP15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 HIST1H2AAQ96QV6 131 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 VRK1Q99986 396 aaPredicted RBP15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 NOX4Q9NPH5 578 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 FGF17O60258 216 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 CSTBP04080 98 aaKnown RBP15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 IL22RA1Q8N6P7 574 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 FBXW5Q969U6 566 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 TCEAL7Q9BRU2 100 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 HINT3Q9NQE9 182 aaKnown RBP15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 SEMA4GQ9NTN9 838 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 PARP14Q460N5 1801 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 PRKAR1BP31321 381 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 PRAMEF8Q5VWM4 474 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 PRAMEF7Q5VXH5 474 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 H3F3CQ6NXT2 135 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 MBOAT2Q6ZWT7 520 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 ARL14Q8N4G2 192 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 GPR148Q8TDV2 347 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 SLC35A4Q96G79 324 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 CHST8Q9H2A9 424 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 NRIP3Q9NQ35 241 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 YBX2Q9Y2T7 364 aaKnown RBP15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 HS3ST3A1Q9Y663 406 aa15.01□□□□□ -0.01
CCDC88B-209ENST00000494080 PRKNO60260 465 aaPredicted RBP15□□□□□ -0.01
CCDC88B-209ENST00000494080 ZNF254O75437 659 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 SLC2A10O95528 541 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 TSFMP43897 325 aaKnown RBP15□□□□□ -0.01
CCDC88B-209ENST00000494080 INSL4Q14641 139 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 PAN3Q58A45 887 aaKnown RBP15□□□□□ -0.01
CCDC88B-209ENST00000494080 OR8D4Q8NGM9 314 aa15□□□□□ -0.01
CCDC88B-209ENST00000494080 TRAF4Q9BUZ4 470 aaPredicted RBP15□□□□□ -0.01
CCDC88B-209ENST00000494080 C1QTNF6Q9BXI9 259 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms