RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 TUBA1BP68363 451 aa10.04□□□□□ -0.8
COL6A3-213ENST00000493475 TUBA4AP68366 448 aa10.04□□□□□ -0.8
COL6A3-213ENST00000493475 POU3F1Q03052 451 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-213ENST00000493475 ADRM1Q16186 407 aa10.04□□□□□ -0.8
COL6A3-213ENST00000493475 CR1LQ2VPA4 569 aa10.04□□□□□ -0.8
COL6A3-213ENST00000493475 RPS26P11Q5JNZ5 115 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-213ENST00000493475 GCNT6Q5T4J0 391 aa10.04□□□□□ -0.8
COL6A3-213ENST00000493475 TUBA1AQ71U36 451 aa10.04□□□□□ -0.8
COL6A3-213ENST00000493475 ZNF786Q8N393 782 aa10.04□□□□□ -0.8
COL6A3-213ENST00000493475 SVOPLQ8N434 492 aa10.04□□□□□ -0.8
COL6A3-213ENST00000493475 LSMEM1Q8N8F7 131 aa10.04□□□□□ -0.8
COL6A3-213ENST00000493475 SCAIQ8N9R8 606 aa10.04□□□□□ -0.8
COL6A3-213ENST00000493475 OR6N1Q8NGY5 312 aa10.04□□□□□ -0.8
COL6A3-213ENST00000493475 ZNF417Q8TAU3 575 aa10.04□□□□□ -0.8
COL6A3-213ENST00000493475 UBASH3BQ8TF42 649 aa10.04□□□□□ -0.8
COL6A3-213ENST00000493475 MAELQ96JY0 434 aaKnown RBP10.04□□□□□ -0.8
COL6A3-213ENST00000493475 LRR1Q96L50 414 aa10.04□□□□□ -0.8
COL6A3-213ENST00000493475 ZNF587Q96SQ5 575 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-213ENST00000493475 TMEFF2Q9UIK5 374 aaPredicted RBP10.04□□□□□ -0.8
COL6A3-213ENST00000493475 ZNF346Q9UL40 294 aaKnown RBP10.04□□□□□ -0.8
COL6A3-213ENST00000493475 HEATR1Q9H583 2144 aaKnown RBP10.04□□□□□ -0.8
COL6A3-213ENST00000493475 NBEAL1Q6ZS30 2694 aa10.04□□□□□ -0.8
COL6A3-213ENST00000493475 ALPK2Q86TB3 2170 aa10.04□□□□□ -0.8
COL6A3-213ENST00000493475 IGHV2OR16-5A0A0B4J2B6 119 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 SLC22A23A1A5C7 686 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 FTCDNL1E5RQL4 147 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 M0R3G1 203 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 SYNGR3O43761 229 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 SNNO75324 88 aaPredicted RBP10.03□□□□□ -0.8
COL6A3-213ENST00000493475 ERLIN1O75477 346 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 UBL3O95164 117 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 TACSTD2P09758 323 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 PRG2P13727 222 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 SLC6A2P23975 617 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 THBS4P35443 961 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 MVDP53602 400 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 RGS8P57771 180 aaPredicted RBP10.03□□□□□ -0.8
COL6A3-213ENST00000493475 PMS2P3Q13401 168 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 KRTAP24-1Q3LI83 254 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 SLC9B1Q4ZJI4 515 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 KRT80Q6KB66 452 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 REEP3Q6NUK4 255 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 SHQ1Q6PI26 577 aaKnown RBP10.03□□□□□ -0.8
COL6A3-213ENST00000493475 GLCCI1Q86VQ1 547 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 KDM8Q8N371 416 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 ARIH2OSQ8N7S6 290 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 KTI12Q96EK9 354 aaPredicted RBP10.03□□□□□ -0.8
COL6A3-213ENST00000493475 SNX18Q96RF0 628 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 PARD6BQ9BYG5 372 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 ULBP2Q9BZM5 246 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 GRIP1Q9Y3R0 1128 aa10.03□□□□□ -0.8
COL6A3-213ENST00000493475 A0A0A6YYJ9 748 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 A0A1B0GWA3 101 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 B4DSR2 109 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 FARS2O95363 451 aaKnown RBP10.02□□□□□ -0.81
COL6A3-213ENST00000493475 TGDSO95455 350 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 MT-ATP6P00846 226 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 MT-ND5P03915 603 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 ADRA2AP08913 450 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 BMP2P12643 396 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 ANPEPP15144 967 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 NR4A1P22736 598 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 AHCYP23526 432 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 GRPRP30550 384 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 CALCRP30988 508 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 LGALS3BPQ08380 585 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 PUDPQ08623 228 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 CAMK2DQ13557 499 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 MAPK11Q15759 364 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 MMEL1Q495T6 779 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 TNFAIP8L3Q5GJ75 292 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 DHRS4L2Q6PKH6 230 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 ZNF813Q6ZN06 617 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 IL17RELQ6ZVW7 336 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 DPPA2Q7Z7J5 298 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 MDP1Q86V88 176 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 SNX33Q8WV41 574 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 VPS33AQ96AX1 596 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 OR2M2Q96R28 347 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 DOK1Q99704 481 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 PTDSS2Q9BVG9 487 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 ZNF416Q9BWM5 594 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 C1orf198Q9H425 327 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 RABEP2Q9H5N1 569 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 NOX3Q9HBY0 568 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 REV1Q9UBZ9 1251 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.02□□□□□ -0.81
COL6A3-213ENST00000493475 ANGPT4Q9Y264 503 aa10.02□□□□□ -0.81
COL6A3-213ENST00000493475 V9GYY5 206 aaPredicted RBP10.02□□□□□ -0.81
COL6A3-213ENST00000493475 A0A087WUJ7 227 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 A0A1W2PPW3 197 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 SLC35F4A4IF30 521 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 PTHP01270 115 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 C1QCP02747 245 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 TFP02787 698 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 HIST1H2ABP04908 130 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 GLRXP35754 106 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 GPR6P46095 362 aaPredicted RBP10.01□□□□□ -0.81
COL6A3-213ENST00000493475 CSNK1A1P48729 337 aa10.01□□□□□ -0.81
COL6A3-213ENST00000493475 DVL1P1P54792 670 aaPredicted RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms