RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 COX4I2Q96KJ9 171 aa13.19□□□□□ -0.3
USP39-217ENST00000491659 NSRP1Q9H0G5 558 aaKnown RBP13.19□□□□□ -0.3
USP39-217ENST00000491659 GPR35Q9HC97 309 aa13.19□□□□□ -0.3
USP39-217ENST00000491659 NANSQ9NR45 359 aa13.19□□□□□ -0.3
USP39-217ENST00000491659 ATP23Q9Y6H3 246 aa13.19□□□□□ -0.3
USP39-217ENST00000491659 ACANP16112 2415 aa13.19□□□□□ -0.3
USP39-217ENST00000491659 ZNF469Q96JG9 3925 aaPredicted RBP13.18□□□□□ -0.3
USP39-217ENST00000491659 TRIM64A6NGJ6 449 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 TRIM64BA6NI03 449 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 ZNF726A6NNF4 738 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 ATP6V1G2-DDX39BF2Z307 99 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 M0R3G1 203 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 OR5F1O95221 314 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 HLA-DOBP13765 273 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 HOXB1P14653 301 aaPredicted RBP13.18□□□□□ -0.3
USP39-217ENST00000491659 TNFRSF1BP20333 461 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 TTKP33981 857 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 FABP6P51161 128 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 ARF1P84077 181 aaKnown RBP13.18□□□□□ -0.3
USP39-217ENST00000491659 CYBRD1Q53TN4 286 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 ZNF544Q6NX49 715 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 B3GLCTQ6Y288 498 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 TSPYL5Q86VY4 417 aaPredicted RBP13.18□□□□□ -0.3
USP39-217ENST00000491659 LZICQ8WZA0 190 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 TPD52L3Q96J77 140 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 HS6ST2Q96MM7 605 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 SLC38A2Q96QD8 506 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 ZNF426Q9BUY5 554 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 EMC6Q9BV81 110 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 GRIP2Q9C0E4 1043 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 GSX1Q9H4S2 264 aaPredicted RBP13.18□□□□□ -0.3
USP39-217ENST00000491659 EFCAB1Q9HAE3 211 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 CRLF2Q9HC73 371 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 CBLN4Q9NTU7 201 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 MED29Q9NX70 200 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 ZNF229Q9UJW7 825 aa13.18□□□□□ -0.3
USP39-217ENST00000491659 C2CD3Q4AC94 2353 aa13.17□□□□□ -0.3
USP39-217ENST00000491659 SLC35F4A4IF30 521 aa13.17□□□□□ -0.3
USP39-217ENST00000491659 ZNF99A8MXY4 864 aaPredicted RBP13.17□□□□□ -0.3
USP39-217ENST00000491659 C11orf98E9PRG8 122 aa13.17□□□□□ -0.3
USP39-217ENST00000491659 SMAD7O15105 426 aaKnown RBP13.17□□□□□ -0.3
USP39-217ENST00000491659 RNF13O43567 381 aa13.17□□□□□ -0.3
USP39-217ENST00000491659 SHOX2O60902 331 aaPredicted RBP13.17□□□□□ -0.3
USP39-217ENST00000491659 HIST1H2ABP04908 130 aa13.17□□□□□ -0.3
USP39-217ENST00000491659 KDELR2P33947 212 aa13.17□□□□□ -0.3
USP39-217ENST00000491659 RBM34P42696 430 aaKnown RBP13.17□□□□□ -0.3
USP39-217ENST00000491659 NUDT2P50583 147 aa13.17□□□□□ -0.3
USP39-217ENST00000491659 TUBA1BP68363 451 aa13.17□□□□□ -0.3
USP39-217ENST00000491659 TUBA4AP68366 448 aa13.17□□□□□ -0.3
USP39-217ENST00000491659 TUBA1AQ71U36 451 aa13.17□□□□□ -0.3
USP39-217ENST00000491659 HIST3H2AQ7L7L0 130 aa13.17□□□□□ -0.3
USP39-217ENST00000491659 NANOGNBQ7Z5D8 188 aa13.17□□□□□ -0.3
USP39-217ENST00000491659 C20orf196Q8IYI0 205 aa13.17□□□□□ -0.3
USP39-217ENST00000491659 MUC15Q8N387 334 aa13.17□□□□□ -0.3
USP39-217ENST00000491659 OR6N1Q8NGY5 312 aa13.17□□□□□ -0.3
USP39-217ENST00000491659 HIST1H2ACQ93077 130 aa13.17□□□□□ -0.3
USP39-217ENST00000491659 LRR1Q96L50 414 aa13.17□□□□□ -0.3
USP39-217ENST00000491659 ADAD1Q96M93 576 aaKnown RBP13.17□□□□□ -0.3
USP39-217ENST00000491659 HOPXQ9BPY8 73 aaPredicted RBP13.17□□□□□ -0.3
USP39-217ENST00000491659 ELAC2Q9BQ52 826 aaKnown RBP13.17□□□□□ -0.3
USP39-217ENST00000491659 FAM107BQ9H098 131 aa13.17□□□□□ -0.3
USP39-217ENST00000491659 NELFAQ9H3P2 528 aa13.17□□□□□ -0.3
USP39-217ENST00000491659 BARX1Q9HBU1 254 aaPredicted RBP13.17□□□□□ -0.3
USP39-217ENST00000491659 CMTM6Q9NX76 183 aa13.17□□□□□ -0.3
USP39-217ENST00000491659 MTORP42345 2549 aa13.17□□□□□ -0.3
USP39-217ENST00000491659 USF3Q68DE3 2245 aa13.17□□□□□ -0.3
USP39-217ENST00000491659 VPS13CQ709C8 3753 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 PLCE1Q9P212 2302 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 IGHV1-18A0A0C4DH31 117 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 NDUFAB1O14561 156 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 GSTA4O15217 222 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 CD8AP01732 235 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 CRYAAP02489 173 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 THRBP10828 461 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 IFNGR1P15260 489 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 IFNA8P32881 189 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 CAPZA2P47755 286 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 OR1E2P47887 323 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 CSNK1A1P48729 337 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 SLC7A2P52569 658 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 BIDP55957 195 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 CBX1P83916 185 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 LIPEQ05469 1076 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 CAMK2DQ13557 499 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 CLEC12BQ2HXU8 276 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 C3orf36Q3SXR2 165 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 PHYHD1Q5SRE7 291 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 CLEC9AQ6UXN8 241 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 HACD2Q6Y1H2 254 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 TREML1Q86YW5 311 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 SLC15A3Q8IY34 581 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 CCDC36Q8IYA8 594 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 TXNDC15Q96J42 360 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 SMR3AQ99954 134 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 PRSS27Q9BQR3 290 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 KATNB1Q9BVA0 655 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 CACNG6Q9BXT2 260 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 ULBP2Q9BZM5 246 aa13.16□□□□□ -0.3
USP39-217ENST00000491659 CRNNQ9UBG3 495 aaPredicted RBP13.16□□□□□ -0.3
USP39-217ENST00000491659 RIMS3Q9UJD0 308 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms