RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 BEX5Q5H9J7 111 aa12.92□□□□□ -0.34
LIMS3-205ENST00000487150 TSPO2Q5TGU0 170 aa12.92□□□□□ -0.34
LIMS3-205ENST00000487150 PGM2L1Q6PCE3 622 aa12.92□□□□□ -0.34
LIMS3-205ENST00000487150 OAFQ86UD1 273 aa12.92□□□□□ -0.34
LIMS3-205ENST00000487150 KDM8Q8N371 416 aa12.92□□□□□ -0.34
LIMS3-205ENST00000487150 ZNF433Q8N7K0 673 aaPredicted RBP12.92□□□□□ -0.34
LIMS3-205ENST00000487150 OR6X1Q8NH79 312 aa12.92□□□□□ -0.34
LIMS3-205ENST00000487150 LINC01560Q8TB33 94 aa12.92□□□□□ -0.34
LIMS3-205ENST00000487150 SLC7A13Q8TCU3 470 aa12.92□□□□□ -0.34
LIMS3-205ENST00000487150 S100PBPQ96BU1 408 aa12.92□□□□□ -0.34
LIMS3-205ENST00000487150 OR2M2Q96R28 347 aa12.92□□□□□ -0.34
LIMS3-205ENST00000487150 SEPHS2Q99611 448 aa12.92□□□□□ -0.34
LIMS3-205ENST00000487150 INIPQ9NRY2 104 aa12.92□□□□□ -0.34
LIMS3-205ENST00000487150 SLC7A10Q9NS82 523 aa12.92□□□□□ -0.34
LIMS3-205ENST00000487150 C20orf141Q9NUB4 165 aa12.92□□□□□ -0.34
LIMS3-205ENST00000487150 AURKCQ9UQB9 309 aa12.92□□□□□ -0.34
LIMS3-205ENST00000487150 HIF3AQ9Y2N7 669 aa12.92□□□□□ -0.34
LIMS3-205ENST00000487150 DHRS12A0PJE2 317 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 OR5H1A6NKK0 313 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 C11orf98E9PRG8 122 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 SERPINI2O75830 405 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 LYZL6O75951 148 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 ZNF432O94892 652 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 BCL10O95999 233 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 IGHG1P01857 330 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 SELENOPP49908 381 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 RPS4XP62701 263 aaKnown RBP12.91□□□□□ -0.34
LIMS3-205ENST00000487150 RPL18Q07020 188 aaKnown RBP12.91□□□□□ -0.34
LIMS3-205ENST00000487150 FOXD4Q12950 439 aaPredicted RBP12.91□□□□□ -0.34
LIMS3-205ENST00000487150 ALG10Q5BKT4 473 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 PODNL1Q6PEZ8 512 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 TMPRSS11FQ6ZWK6 438 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 SLC35D2Q76EJ3 337 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 ZNF295-AS1Q8N0V1 137 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 TMEM123Q8N131 208 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 OR4K5Q8NGD3 323 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 OR6N1Q8NGY5 312 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 FNDC8Q8TC99 324 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 ZNF566Q969W8 418 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 BOD1Q96IK1 185 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 CLPTM1LQ96KA5 538 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 WFIKKN1Q96NZ8 548 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 ALKBH3Q96Q83 286 aaPredicted RBP12.91□□□□□ -0.34
LIMS3-205ENST00000487150 TAS2R5Q9NYW4 299 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 AMDHD2Q9Y303 409 aa12.91□□□□□ -0.34
LIMS3-205ENST00000487150 UNC79Q9P2D8 2635 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 SH3PXD2BA1X283 911 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 RPL36A-HNRNPH2H7BZ11 118 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 PDLIM1O00151 329 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 GSC2O15499 205 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 CLOCKO15516 846 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 PIP5K1CO60331 668 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 CTAG2O75638 210 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 RAD51DO75771 328 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 CIB2O75838 187 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 WNT11O96014 354 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 HPRP00739 348 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 TSPAN19P0C672 248 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 IFNGR1P15260 489 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 RRM2P31350 389 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 CSNK1A1P48729 337 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 MS4A2Q01362 244 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 ROR2Q01974 943 aaKnown RBP12.9□□□□□ -0.34
LIMS3-205ENST00000487150 PPA1Q15181 289 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 IQCCQ4KMZ1 466 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.9□□□□□ -0.34
LIMS3-205ENST00000487150 TSEN54Q7Z6J9 526 aaKnown RBP12.9□□□□□ -0.34
LIMS3-205ENST00000487150 SPATA24Q86W54 205 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 CCDC36Q8IYA8 594 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 LRRC17Q8N6Y2 441 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 SLC25A44Q96H78 314 aaPredicted RBP12.9□□□□□ -0.34
LIMS3-205ENST00000487150 ALPK1Q96QP1 1244 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 CADM1Q9BY67 442 aaKnown RBP12.9□□□□□ -0.34
LIMS3-205ENST00000487150 ULBP2Q9BZM5 246 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 CLEC4MQ9H2X3 399 aaPredicted RBP12.9□□□□□ -0.34
LIMS3-205ENST00000487150 ESRP2Q9H6T0 727 aaKnown RBP12.9□□□□□ -0.34
LIMS3-205ENST00000487150 REEP1Q9H902 201 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 RASSF1Q9NS23 344 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 POMPQ9Y244 141 aa12.9□□□□□ -0.34
LIMS3-205ENST00000487150 TRBV4-1A0A0J9YWV2 114 aa12.89□□□□□ -0.35
LIMS3-205ENST00000487150 FAM221AA4D161 298 aa12.89□□□□□ -0.35
LIMS3-205ENST00000487150 SLC35F4A4IF30 521 aa12.89□□□□□ -0.35
LIMS3-205ENST00000487150 A6NIZ1 184 aa12.89□□□□□ -0.35
LIMS3-205ENST00000487150 OR10H3O60404 316 aa12.89□□□□□ -0.35
LIMS3-205ENST00000487150 DIRAS1O95057 198 aa12.89□□□□□ -0.35
LIMS3-205ENST00000487150 ITGA5P08648 1049 aa12.89□□□□□ -0.35
LIMS3-205ENST00000487150 HOXB1P14653 301 aaPredicted RBP12.89□□□□□ -0.35
LIMS3-205ENST00000487150 EDNRAP25101 427 aa12.89□□□□□ -0.35
LIMS3-205ENST00000487150 NTF4P34130 210 aa12.89□□□□□ -0.35
LIMS3-205ENST00000487150 AQP2P41181 271 aa12.89□□□□□ -0.35
LIMS3-205ENST00000487150 GPR4P46093 362 aa12.89□□□□□ -0.35
LIMS3-205ENST00000487150 BIDP55957 195 aa12.89□□□□□ -0.35
LIMS3-205ENST00000487150 RAP1BP61224 184 aa12.89□□□□□ -0.35
LIMS3-205ENST00000487150 RAP1AP62834 184 aa12.89□□□□□ -0.35
LIMS3-205ENST00000487150 SNTB1Q13884 538 aaKnown RBP12.89□□□□□ -0.35
LIMS3-205ENST00000487150 ANKRD34AQ69YU3 496 aa12.89□□□□□ -0.35
LIMS3-205ENST00000487150 ANKRD16Q6P6B7 361 aa12.89□□□□□ -0.35
LIMS3-205ENST00000487150 KLHL17Q6TDP4 642 aa12.89□□□□□ -0.35
LIMS3-205ENST00000487150 C20orf196Q8IYI0 205 aa12.89□□□□□ -0.35
LIMS3-205ENST00000487150 OR52J3Q8NH60 311 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms