RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 ANP32BQ92688 251 aaKnown RBP6.68□□□□□ -1.34
USP54-211ENST00000474929 CDKL2Q92772 493 aa6.68□□□□□ -1.34
USP54-211ENST00000474929 ISOC1Q96CN7 298 aa6.68□□□□□ -1.34
USP54-211ENST00000474929 NEIL1Q96FI4 390 aaPredicted RBP6.68□□□□□ -1.34
USP54-211ENST00000474929 CHMP6Q96FZ7 201 aa6.68□□□□□ -1.34
USP54-211ENST00000474929 RCHY1Q96PM5 261 aa6.68□□□□□ -1.34
USP54-211ENST00000474929 OR8B2Q96RD0 313 aa6.68□□□□□ -1.34
USP54-211ENST00000474929 GPR22Q99680 433 aa6.68□□□□□ -1.34
USP54-211ENST00000474929 PCGF1Q9BSM1 259 aa6.68□□□□□ -1.34
USP54-211ENST00000474929 CHID1Q9BWS9 393 aa6.68□□□□□ -1.34
USP54-211ENST00000474929 PIGUQ9H490 435 aa6.68□□□□□ -1.34
USP54-211ENST00000474929 CTPS2Q9NRF8 586 aa6.68□□□□□ -1.34
USP54-211ENST00000474929 NOP53Q9NZM5 478 aaKnown RBP6.68□□□□□ -1.34
USP54-211ENST00000474929 ZNRD1Q9P1U0 126 aa6.68□□□□□ -1.34
USP54-211ENST00000474929 TMCO1Q9UM00 188 aa6.68□□□□□ -1.34
USP54-211ENST00000474929 FOXJ3Q9UPW0 622 aa6.68□□□□□ -1.34
USP54-211ENST00000474929 RASD1Q9Y272 281 aa6.68□□□□□ -1.34
USP54-211ENST00000474929 PPP2R2CQ9Y2T4 447 aa6.68□□□□□ -1.34
USP54-211ENST00000474929 STARD9Q9P2P6 4700 aa6.68□□□□□ -1.34
USP54-211ENST00000474929 KIAA1109Q2LD37 5005 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 TMEM229AB2RXF0 380 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 RAMP3O60896 148 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 UPK3AO75631 287 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 CYP7B1O75881 506 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 TOX4O94842 621 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 SNAP29O95721 258 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 CSTAP01040 98 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 PDYNP01213 254 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 PTHP01270 115 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 IGHV1-46P01743 117 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 KRT6AP02538 564 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 THY1P04216 161 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 KRT6BP04259 564 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 TNFSF4P23510 183 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 CXCR5P32302 372 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 RPL4P36578 427 aaKnown RBP6.67□□□□□ -1.34
USP54-211ENST00000474929 KRT6CP48668 564 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 HSPB3Q12988 150 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 TRAF3Q13114 568 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 KCTD19Q17RG1 926 aaPredicted RBP6.67□□□□□ -1.34
USP54-211ENST00000474929 CEACAM16Q2WEN9 425 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 NDUFAF6Q330K2 333 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 SGO1Q5FBB7 561 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 TCTEX1D4Q5JR98 221 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 DCST2Q5T1A1 773 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 DDX59Q5T1V6 619 aaKnown RBP eCLIP6.67□□□□□ -1.34
USP54-211ENST00000474929 METTL11BQ5VVY1 283 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 ZFAND6Q6FIF0 208 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 NOXRED1Q6NXP6 359 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 TRMT10BQ6PF06 316 aaKnown RBP6.67□□□□□ -1.34
USP54-211ENST00000474929 ADAMTSL5Q6ZMM2 481 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 EIF3MQ7L2H7 374 aaKnown RBP6.67□□□□□ -1.34
USP54-211ENST00000474929 COMTD1Q86VU5 262 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 KLBQ86Z14 1044 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 CFAP36Q96G28 342 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 ZNF764Q96H86 408 aaPredicted RBP6.67□□□□□ -1.34
USP54-211ENST00000474929 CITED4Q96RK1 184 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 TAPBPLQ9BX59 468 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 LRMDAQ9H2I8 198 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 PPA2Q9H2U2 334 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 CAB39LQ9H9S4 337 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 CDH20Q9HBT6 801 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 B3GNT2Q9NY97 397 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 TRIM33Q9UPN9 1127 aa6.67□□□□□ -1.34
USP54-211ENST00000474929 GIMAP1-GIMAP5A0A087WTJ2 511 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 CENPVL1A0A0U1RR11 272 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 CENPVL3A0A0U1RRI6 287 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 SERTM1A2A2V5 107 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 ZNF503-AS2A6NEH8 195 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 ZNF879B4DU55 563 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 H3BSA7 217 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 OR7A17O14581 309 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 SURF4O15260 269 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 PDPK1O15530 556 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 SPRY3O43610 288 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 CLPTM1O96005 669 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 HLA-HP01893 362 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 FGGP02679 453 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 ANXA4P09525 319 aaPredicted RBP6.66□□□□□ -1.34
USP54-211ENST00000474929 WNT2P09544 360 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 VSIG10L2P0DP72 767 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 CFHR2P36980 270 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 NPY4RP50391 375 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 C2orf80Q0P641 193 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 FAM83EQ2M2I3 478 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 ARHGAP11BQ3KRB8 267 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 NKAPLQ5M9Q1 402 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 ZBTB37Q5TC79 503 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 CD276Q5ZPR3 534 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 ZNF774Q6NX45 483 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 KLC3Q6P597 504 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 ZNF662Q6ZS27 426 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 C1orf122Q6ZSJ8 110 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 CREB3L2Q70SY1 520 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 ZNF627Q7L945 461 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 LINGO2Q7L985 606 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 ZER1Q7Z7L7 766 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 RNF130Q86XS8 419 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 FITM2Q8N6M3 262 aa6.66□□□□□ -1.34
USP54-211ENST00000474929 OR1J2Q8NGS2 313 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms