RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 IGHEP01854 428 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 JUNDP17535 347 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 RPL7P18124 248 aaKnown RBP12.39□□□□□ -0.43
COL6A3-209ENST00000472056 IGFBP4P22692 258 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 EDAQ92838 391 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 TAF1P21675 1872 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 MT-ATP6P00846 226 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 ICAM2P13598 275 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 ZNF26P17031 533 aaPredicted RBP12.39□□□□□ -0.43
COL6A3-209ENST00000472056 ITGB8P26012 769 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 VAMP3Q15836 100 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 TMEM183BQ1AE95 376 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 RBM23Q86U06 439 aaKnown RBP12.39□□□□□ -0.43
COL6A3-209ENST00000472056 FOXJ1Q92949 421 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 GABARAPL1Q9H0R8 117 aa12.39□□□□□ -0.43
COL6A3-209ENST00000472056 CFAP20Q9Y6A4 193 aaKnown RBP12.39□□□□□ -0.43
COL6A3-209ENST00000472056 DDNO94850 711 aaPredicted RBP12.38□□□□□ -0.43
COL6A3-209ENST00000472056 PTAFRP25105 342 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 ZBTB37Q5TC79 503 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 OR13C2Q8NGS9 318 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 CXorf58Q96LI9 332 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 ZFYVE21Q9BQ24 234 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 OR52A1Q9UKL2 312 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 A0A1W2PPH5 198 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 B4GAT1O43505 415 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 SCO2O43819 266 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 THBS1P07996 1170 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 TMEM201Q5SNT2 666 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 OR9K2Q8NGE7 335 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 UBTD2Q8WUN7 234 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 DUS3LQ96G46 650 aaKnown RBP12.38□□□□□ -0.43
COL6A3-209ENST00000472056 TECTBQ96PL2 329 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 PIGQQ9BRB3 760 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 TGIF2Q9GZN2 237 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 C11orf54Q9H0W9 315 aaPredicted RBP12.38□□□□□ -0.43
COL6A3-209ENST00000472056 TMEM221A6NGB7 291 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 MAKP20794 623 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 Q6ZVL8 140 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 ZNF595Q8IYB9 648 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 COQ3Q9NZJ6 369 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 KCTD3Q9Y597 815 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 KIR2DS5A0A0G2JLQ3 304 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 A0A0G2JNG1 304 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 KIR2DS3K7RE56 304 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 F2P00734 622 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 HLA-FP30511 346 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 CSNK1DP48730 415 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 KIR2DS5Q14953 304 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 SLC38A6Q8IZM9 456 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 INTS12Q96CB8 462 aaKnown RBP12.38□□□□□ -0.43
COL6A3-209ENST00000472056 ARSGQ96EG1 525 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 PLEKHF2Q9H8W4 249 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 GTF3C1Q12789 2109 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 PRAMEF27A3QJZ7 478 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 CDC123O75794 336 aaPredicted RBP12.38□□□□□ -0.43
COL6A3-209ENST00000472056 ABHD16AO95870 558 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 EIF1P41567 113 aaKnown RBP12.38□□□□□ -0.43
COL6A3-209ENST00000472056 TP53I3Q53FA7 332 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 ENTPD8Q5MY95 495 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 PRAMEF9Q5VWM5 478 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 PLCXD3Q63HM9 321 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 F2RL3Q96RI0 385 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 TMEM43Q9BTV4 400 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 UBQLN3Q9H347 655 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 HOXB5P09067 269 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 FPR3P25089 353 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 RPS15P62841 145 aaKnown RBP12.38□□□□□ -0.43
COL6A3-209ENST00000472056 MANEAQ5SRI9 462 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 SIAH3Q8IW03 269 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 TOLLIPQ9H0E2 274 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 DNAJB11Q9UBS4 358 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 ZNF728P0DKX0 622 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 ITGB7P26010 798 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 NDUFA6P56556 154 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 CATSPERDQ86XM0 798 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 OR4A16Q8NH70 328 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 MOCOSQ96EN8 888 aa12.38□□□□□ -0.43
COL6A3-209ENST00000472056 RBM24Q9BX46 236 aaKnown RBP12.38□□□□□ -0.43
COL6A3-209ENST00000472056 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.38□□□□□ -0.43
COL6A3-209ENST00000472056 CICQ96RK0 1608 aaPredicted RBP12.37□□□□□ -0.43
COL6A3-209ENST00000472056 NPIPB15A6NHN6 443 aaPredicted RBP12.37□□□□□ -0.43
COL6A3-209ENST00000472056 GRPRP30550 384 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 C2orf27AQ580R0 203 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 RABEPKQ7Z6M1 372 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 UTP4Q969X6 686 aaKnown RBP12.37□□□□□ -0.43
COL6A3-209ENST00000472056 CABLES2Q9BTV7 478 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 ST8SIA3O43173 380 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 TIGITQ495A1 244 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 ABLIM2Q6H8Q1 611 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 IL20Q9NYY1 176 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 HSFX1Q9UBD0 423 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 RHBDD3Q9Y3P4 386 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 LEFTY2O00292 366 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 CYP27C1Q4G0S4 372 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 CDH26Q8IXH8 852 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 CLECL1Q8IZS7 167 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 TMEM106AQ96A25 262 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 CT45A10P0DMU9 189 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 GJA5P36382 358 aa12.37□□□□□ -0.43
COL6A3-209ENST00000472056 ABHD4Q8TB40 342 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms