RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 MERTKQ12866 999 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 CAPRIN1Q14444 709 aaKnown RBP6.38□□□□□ -1.39
USP54-208ENST00000461520 CASP8Q14790 479 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 PPA1Q15181 289 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 MAPK14Q16539 360 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 ZNF672Q499Z4 452 aaPredicted RBP6.38□□□□□ -1.39
USP54-208ENST00000461520 SYT14P1Q58G82 188 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 PLAC9Q5JTB6 97 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 TIMM23BQ5SRD1 257 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 SAXO2Q658L1 398 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 TNFAIP8L2Q6P589 184 aaPredicted RBP6.38□□□□□ -1.39
USP54-208ENST00000461520 TMEM108Q6UXF1 575 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 FRRS1Q6ZNA5 592 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 GRINAQ7Z429 371 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 GALNT5Q7Z7M9 940 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 P2RY8Q86VZ1 359 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 ANKRD46Q86W74 232 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 CLEC4FQ8N1N0 589 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 ZNF619Q8N2I2 560 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 SPATA3Q8NHX4 192 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 ZNF563Q8TA94 476 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 SMAP2Q8WU79 429 aaPredicted RBP6.38□□□□□ -1.39
USP54-208ENST00000461520 ZNF75CPQ92670 426 aaPredicted RBP6.38□□□□□ -1.39
USP54-208ENST00000461520 ROPN1LQ96C74 230 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 MUCL1Q96DR8 90 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 ZHX1-C8orf76Q96EF9 292 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 NEURL3Q96EH8 262 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 PPP1R36Q96LQ0 422 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 ZNF300Q96RE9 604 aaPredicted RBP6.38□□□□□ -1.39
USP54-208ENST00000461520 SORT1Q99523 831 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 CCDC106Q9BWC9 280 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 C20orf27Q9GZN8 174 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 MEAF6Q9HAF1 191 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 EXOSC3Q9NQT5 275 aaKnown RBP6.38□□□□□ -1.39
USP54-208ENST00000461520 EMC3Q9P0I2 261 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 MARCOQ9UEW3 520 aaPredicted RBP6.38□□□□□ -1.39
USP54-208ENST00000461520 CHRNA9Q9UGM1 479 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 HDGFL3Q9Y3E1 203 aa6.38□□□□□ -1.39
USP54-208ENST00000461520 HEATR5AQ86XA9 2040 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 GOLGA8QA0A0J9YX86 632 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 GOLGA8OA6NCC3 632 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 DPRXA6NFQ7 191 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 ZNF716A6NP11 495 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 C9JVG2 144 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 GOLGA8NF8WBI6 632 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 HMGN4O00479 90 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 GPR171O14626 319 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 LYZL6O75951 148 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 PMS2P2O95744 297 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 SOD3P08294 240 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 TFPIP10646 304 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 GGT1P19440 569 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 IGHV1-2P23083 117 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 S100A3P33764 101 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 IDUAP35475 653 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 CHI3L1P36222 383 aaPredicted RBP6.37□□□□□ -1.39
USP54-208ENST00000461520 HTR3AP46098 478 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 ZNF134P52741 427 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 CASP9P55211 416 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 KCNJ10P78508 379 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 HPCAP84074 193 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 LRRC74AQ0VAA2 488 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 FUT5Q11128 374 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 STX3Q13277 289 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 TNK1Q13470 666 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 STK11Q15831 433 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 CLEC12BQ2HXU8 276 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 PGGHGQ32M88 737 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 FAM174BQ3ZCQ3 159 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 GPAT3Q53EU6 434 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 TNFAIP8L3Q5GJ75 292 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 SPANXN4Q5MJ08 99 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 FBXW9Q5XUX1 488 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 ABLIM2Q6H8Q1 611 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 OLIG3Q7RTU3 272 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 ZNF100Q8IYN0 542 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 ARFGAP2Q8N6H7 521 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 TRIML2Q8N7C3 387 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 PIGXQ8TBF5 258 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 PMM1Q92871 262 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 RAB8BQ92930 207 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 RADILQ96JH8 1075 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 CCDC115Q96NT0 180 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 TRNT1Q96Q11 434 aaKnown RBP6.37□□□□□ -1.39
USP54-208ENST00000461520 SLC35A5Q9BS91 424 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 NUF2Q9BZD4 464 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 TRIM2Q9C040 744 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 CTPS2Q9NRF8 586 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 FAIMQ9NVQ4 179 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 PNPOQ9NVS9 261 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 BTNL2Q9UIR0 455 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 PRDM4Q9UKN5 801 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 LIPT1Q9Y234 373 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 TRAPPC4Q9Y296 219 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 NOSIPQ9Y314 301 aaKnown RBP6.37□□□□□ -1.39
USP54-208ENST00000461520 MAGED1Q9Y5V3 778 aaPredicted RBP6.37□□□□□ -1.39
USP54-208ENST00000461520 MXRA5Q9NR99 2828 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 SONP18583 2426 aaKnown RBP6.37□□□□□ -1.39
USP54-208ENST00000461520 DSCAMO60469 2012 aa6.37□□□□□ -1.39
USP54-208ENST00000461520 CHD3Q12873 2000 aaKnown RBP6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms