RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 RAB26Q9ULW5 256 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 FLVCR2Q9UPI3 526 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 U3KQ87 197 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 CACNA1AO00555 2505 aa4.37□□□□□ -1.71
CCDC88A-209ENST00000456975 ZNF318Q5VUA4 2279 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 LOC102723996A0A087X1L8 192 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 hCG_38984A0A1B0GV85 526 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 RPS10-NUDT3A0A1W2PQS6 291 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 MBLAC1A4D2B0 266 aaPredicted RBP4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 TBC1D3BA6NDS4 549 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 IGLON5A6NGN9 336 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 FAM74A7A6NL05 159 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 A8MXK9 166 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 ZNF99A8MXY4 864 aaPredicted RBP4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 A8MZ25 164 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 C9J4A7 227 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 COPEO14579 308 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 GSC2O15499 205 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 CNIH1O95406 144 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 GH1P01241 217 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 IFNA17P01571 189 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 FTH1P02794 183 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 T-ENOLP0DO92 83 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 B4GALT1P15291 398 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 CXCR1P25024 350 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 STOMP27105 288 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 OPRL1P41146 370 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 MAGEA12P43365 314 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 SLC6A12P48065 614 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 GCLMP48507 274 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 WNT4P56705 351 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 RRAS2P62070 204 aaPredicted RBP4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 SELENOTP62341 195 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 CSTF1Q05048 431 aaKnown RBP4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 SLC18A2Q05940 514 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 MESP2Q0VG99 397 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 KRT33BQ14525 404 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 ZNF699Q32M78 642 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 FAM74A3Q4VXF1 159 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 ZNF766Q5HY98 468 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 TBC1D3GQ6DHY5 549 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 GRHL2Q6ISB3 625 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 SLC8B1Q6J4K2 584 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 RNASEKQ6P5S7 137 aaKnown RBP4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 PODNL1Q6PEZ8 512 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 C16orf89Q6UX73 402 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 LINGO4Q6UY18 593 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 SSX7Q7RTT5 188 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 APTXQ7Z2E3 356 aaKnown RBP4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 B3GNT8Q7Z7M8 397 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 Q8N402 240 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 ATPAF2Q8N5M1 289 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 PTGR2Q8N8N7 351 aaPredicted RBP4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 OR9A4Q8NGU2 314 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 ASB17Q8WXJ9 295 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 ACOT12Q8WYK0 555 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 NPIPB3Q92617 1050 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 GHSRQ92847 366 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 PGAM5Q96HS1 289 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 HSFY1Q96LI6 401 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 SPATA25Q9BR10 227 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 NUDT22Q9BRQ3 303 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 DPH7Q9BTV6 452 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 SUCNR1Q9BXA5 334 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 GPR88Q9GZN0 384 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 SIRPDQ9H106 197 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 ZDHHC6Q9H6R6 413 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 EFCAB1Q9HAE3 211 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 MIEF1Q9NQG6 463 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 PLEKHJ1Q9NW61 149 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 C2orf42Q9NWW7 574 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 FBXL17Q9UF56 701 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 UBQLN2Q9UHD9 624 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 CDH22Q9UJ99 828 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 ANGPT4Q9Y264 503 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 FBXO7Q9Y3I1 522 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 ENTPD2Q9Y5L3 495 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 OAS3Q9Y6K5 1087 aaKnown RBP4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 BAZ2BQ9UIF8 2168 aaKnown RBP4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 SAC3D1A6NKF1 404 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 OR11H12B2RN74 326 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 C9JVG2 144 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 M0R143 59 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 CLIC1O00299 241 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 UBDO15205 165 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 HOXA3O43365 443 aaPredicted RBP4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 RAD51CO43502 376 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 BCL10O95999 233 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 OR8U8P0C7N1 319 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 CPN1P15169 458 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 ARSBP15848 533 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 CEBPBP17676 345 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 LGALS7P47929 136 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 RAB28P51157 221 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 ART1P52961 327 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 AQP4P55087 323 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 RAG2P55895 527 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 CLDN18P56856 261 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 LOXL3P58215 753 aa4.36□□□□□ -1.71
CCDC88A-209ENST00000456975 RPL15P61313 204 aaKnown RBP4.36□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms