RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 TAS2R5Q9NYW4 299 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 MRM2Q9UI43 246 aaKnown RBP13.67□□□□□ -0.22
LDLR-202ENST00000455727 ZNF346Q9UL40 294 aaKnown RBP13.67□□□□□ -0.22
LDLR-202ENST00000455727 CACNG2Q9Y698 323 aa13.67□□□□□ -0.22
LDLR-202ENST00000455727 ARID1BQ8NFD5 2236 aaPredicted RBP13.66□□□□□ -0.22
LDLR-202ENST00000455727 A0A1B0GVC2 190 aa13.66□□□□□ -0.22
LDLR-202ENST00000455727 A6NIN4 97 aa13.66□□□□□ -0.22
LDLR-202ENST00000455727 HSPB2A8KAH6 182 aa13.66□□□□□ -0.22
LDLR-202ENST00000455727 IDSB3KWA1 339 aa13.66□□□□□ -0.22
LDLR-202ENST00000455727 DCTN6O00399 190 aa13.66□□□□□ -0.22
LDLR-202ENST00000455727 GSTZ1O43708 216 aaPredicted RBP13.66□□□□□ -0.22
LDLR-202ENST00000455727 ABHD16AO95870 558 aa13.66□□□□□ -0.22
LDLR-202ENST00000455727 YES1P07947 543 aa13.66□□□□□ -0.22
LDLR-202ENST00000455727 P2RX1P51575 399 aa13.66□□□□□ -0.22
LDLR-202ENST00000455727 AGFG1P52594 562 aaKnown RBP13.66□□□□□ -0.22
LDLR-202ENST00000455727 EGR3Q06889 387 aa13.66□□□□□ -0.22
LDLR-202ENST00000455727 CCDC85BQ15834 202 aaPredicted RBP13.66□□□□□ -0.22
LDLR-202ENST00000455727 HSPB2Q16082 182 aa13.66□□□□□ -0.22
LDLR-202ENST00000455727 UBE2NLQ5JXB2 153 aa13.66□□□□□ -0.22
LDLR-202ENST00000455727 C1orf189Q5VU69 101 aa13.66□□□□□ -0.22
LDLR-202ENST00000455727 ASB18Q6ZVZ8 466 aa13.66□□□□□ -0.22
LDLR-202ENST00000455727 MAMDC2Q7Z304 686 aaPredicted RBP13.66□□□□□ -0.22
LDLR-202ENST00000455727 OR4D9Q8NGE8 314 aa13.66□□□□□ -0.22
LDLR-202ENST00000455727 YIPF5Q969M3 257 aa13.66□□□□□ -0.22
LDLR-202ENST00000455727 DMRTB1Q96MA1 342 aa13.66□□□□□ -0.22
LDLR-202ENST00000455727 FYTTD1Q96QD9 318 aaKnown RBP13.66□□□□□ -0.22
LDLR-202ENST00000455727 TRAF4Q9BUZ4 470 aaPredicted RBP13.66□□□□□ -0.22
LDLR-202ENST00000455727 WDR76Q9H967 626 aa13.66□□□□□ -0.22
LDLR-202ENST00000455727 SRPK3Q9UPE1 567 aa13.66□□□□□ -0.22
LDLR-202ENST00000455727 PCDHGA9Q9Y5G4 932 aaKnown RBP13.66□□□□□ -0.22
LDLR-202ENST00000455727 TMEM14AQ9Y6G1 99 aa13.66□□□□□ -0.22
LDLR-202ENST00000455727 PCNX3Q9H6A9 2034 aa13.66□□□□□ -0.22
LDLR-202ENST00000455727 NPIPB7O75200 414 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 SLC25A12O75746 678 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 ARSBP15848 533 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 GRPRP30550 384 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 POLR2HP52434 150 aaKnown RBP13.65□□□□□ -0.22
LDLR-202ENST00000455727 MRPS15P82914 257 aaKnown RBP13.65□□□□□ -0.22
LDLR-202ENST00000455727 ALKBH1Q13686 389 aaKnown RBP13.65□□□□□ -0.22
LDLR-202ENST00000455727 SGCBQ16585 318 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 LIPNQ5VXI9 398 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 SLC7A5P1Q8MH63 180 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 SIX5Q8N196 739 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 DTX3Q8N9I9 347 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 RGP1Q92546 391 aaPredicted RBP13.65□□□□□ -0.22
LDLR-202ENST00000455727 KLHL15Q96M94 604 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 KLHDC2Q9Y2U9 406 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 OR6C70A6NIJ9 312 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 IFITM5A6NNB3 132 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 AIPO00170 330 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 PHYHO14832 338 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 ITGA10O75578 1167 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 PRKCAP17252 672 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 ALOX5APP20292 161 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 MAPK3P27361 379 aaPredicted RBP13.65□□□□□ -0.22
LDLR-202ENST00000455727 RRAS2P62070 204 aaPredicted RBP13.65□□□□□ -0.22
LDLR-202ENST00000455727 CDK10Q15131 360 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 YIPF7Q8N8F6 280 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 ZNF671Q8TAW3 534 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 GFI1Q99684 422 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 C7orf50Q9BRJ6 194 aaKnown RBP13.65□□□□□ -0.22
LDLR-202ENST00000455727 PTDSS2Q9BVG9 487 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 PRO3102Q9H379 93 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 LAMP5Q9UJQ1 280 aa13.65□□□□□ -0.22
LDLR-202ENST00000455727 PSMD9O00233 223 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 NUDT14O95848 222 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 OR8G3PP0DMU2 310 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 EVI2BP34910 448 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 BTCP35070 178 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 RCVRNP35243 200 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 CD83Q01151 205 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 NTRK2Q16620 822 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 Q499Y3 187 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 FAM69AQ5T7M9 428 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 RHBDD2Q6NTF9 364 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 C5orf46Q6UWT4 87 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 GRINAQ7Z429 371 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 PRSS58Q8IYP2 241 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 OR5AK2Q8NH90 309 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 GPR119Q8TDV5 335 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 ANKRD10Q9NXR5 420 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 FRRS1LQ9P0K9 344 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 CABIN1Q9Y6J0 2220 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 IGLV3-12A0A075B6K2 115 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 TMED7-TICAM2A0A0A6YYA0 188 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 ARPC4-TTLL3A0A0A6YYG9 625 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 A0A0B4J203 849 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 ACOD1A6NK06 481 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 A8MVM7 634 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 K7ESF4 209 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 ZNF432O94892 652 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 CXCL12P48061 93 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 CENPAP49450 140 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 RAB25P57735 213 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 SQSTM1Q13501 440 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 C1QL3Q5VWW1 255 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 PTCRAQ6ISU1 281 aaPredicted RBP13.64□□□□□ -0.23
LDLR-202ENST00000455727 TMEM71Q6P5X7 295 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 COX15Q7KZN9 410 aa13.64□□□□□ -0.23
LDLR-202ENST00000455727 KRT74Q7RTS7 529 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms