RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 UGT2B15P54855 530 aa11.14□□□□□ -0.63
PRPF40A-203ENST00000448428 ARF1P84077 181 aaKnown RBP11.14□□□□□ -0.63
PRPF40A-203ENST00000448428 ZP4Q12836 540 aa11.14□□□□□ -0.63
PRPF40A-203ENST00000448428 PGGHGQ32M88 737 aa11.14□□□□□ -0.63
PRPF40A-203ENST00000448428 CARD17Q5XLA6 110 aa11.14□□□□□ -0.63
PRPF40A-203ENST00000448428 ANKRD16Q6P6B7 361 aa11.14□□□□□ -0.63
PRPF40A-203ENST00000448428 SLC22A25Q6T423 547 aa11.14□□□□□ -0.63
PRPF40A-203ENST00000448428 KLHL24Q6TFL4 600 aa11.14□□□□□ -0.63
PRPF40A-203ENST00000448428 VTCN1Q7Z7D3 282 aa11.14□□□□□ -0.63
PRPF40A-203ENST00000448428 C20orf196Q8IYI0 205 aa11.14□□□□□ -0.63
PRPF40A-203ENST00000448428 PIK3C3Q8NEB9 887 aa11.14□□□□□ -0.63
PRPF40A-203ENST00000448428 ANKK1Q8NFD2 765 aa11.14□□□□□ -0.63
PRPF40A-203ENST00000448428 TMEM255BQ8WV15 326 aa11.14□□□□□ -0.63
PRPF40A-203ENST00000448428 LZICQ8WZA0 190 aa11.14□□□□□ -0.63
PRPF40A-203ENST00000448428 RADILQ96JH8 1075 aa11.14□□□□□ -0.63
PRPF40A-203ENST00000448428 GSX2Q9BZM3 304 aa11.14□□□□□ -0.63
PRPF40A-203ENST00000448428 NELFAQ9H3P2 528 aa11.14□□□□□ -0.63
PRPF40A-203ENST00000448428 CRLF2Q9HC73 371 aa11.14□□□□□ -0.63
PRPF40A-203ENST00000448428 ZNF701Q9NV72 531 aaPredicted RBP11.14□□□□□ -0.63
PRPF40A-203ENST00000448428 ABCD2Q9UBJ2 740 aa11.14□□□□□ -0.63
PRPF40A-203ENST00000448428 ZNF229Q9UJW7 825 aa11.14□□□□□ -0.63
PRPF40A-203ENST00000448428 SNX13Q9Y5W8 968 aa11.14□□□□□ -0.63
PRPF40A-203ENST00000448428 ZNF726A6NNF4 738 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 E7EQL1 145 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 M0R3G1 203 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 OVOL3O00110 214 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 NDUFAB1O14561 156 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 DYNC1I1O14576 645 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 TMCC2O75069 709 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 OR6A2O95222 327 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 ZNF682O95780 498 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 CD8AP01732 235 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 MT-ND1P03886 318 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 HIST1H2ABP04908 130 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 THRBP10828 461 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 IFNGR1P15260 489 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 NCK1P16333 377 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 FUT4P22083 530 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 RBM34P42696 430 aaKnown RBP11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 YAP1P46937 504 aaKnown RBP11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 PTH2RP49190 550 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 SH3BGRP55822 239 aaPredicted RBP11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 CAMK2DQ13557 499 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 CEACAM16Q2WEN9 425 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 Q5PR19 223 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 CBLL1Q75N03 491 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 HIST3H2AQ7L7L0 130 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 SLC46A3Q7Z3Q1 461 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 PFN4Q8NHR9 129 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 MAGEE2Q8TD90 523 aaPredicted RBP11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 TMEM239Q8WW34 195 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 HIST1H2ACQ93077 130 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 LRR1Q96L50 414 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 HS6ST2Q96MM7 605 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 KCTD14Q9BQ13 255 aaPredicted RBP11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 CXorf56Q9H5V9 222 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 OBP2BQ9NPH6 170 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 DLL4Q9NR61 685 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 C20orf141Q9NUB4 165 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 A4GNTQ9UNA3 340 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 ARL2BPQ9Y2Y0 163 aa11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 MAGED1Q9Y5V3 778 aaPredicted RBP11.13□□□□□ -0.63
PRPF40A-203ENST00000448428 USF3Q68DE3 2245 aa11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 ARPC4-TTLL3A0A0A6YYG9 625 aa11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 BLOC1S5-TXNDC5H3BN57 136 aa11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 J3KTA2 159 aa11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 RNF13O43567 381 aa11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 SERPINA1P01009 418 aa11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 UMPSP11172 480 aa11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 HOXB1P14653 301 aaPredicted RBP11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 FUT1P19526 365 aa11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 CDH11P55287 796 aa11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 BIDP55957 195 aa11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 UBE2NP61088 152 aaKnown RBP11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 RPS4XP62701 263 aaKnown RBP11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 TUBA1BP68363 451 aa11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 TUBA4AP68366 448 aa11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 ST3GAL3Q11203 375 aa11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 PRSS57Q6UWY2 283 aa11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 TUBA1AQ71U36 451 aa11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 SLC35D2Q76EJ3 337 aa11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 YTHDF3Q7Z739 585 aaKnown RBP11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 DEPDC4Q8N2C3 294 aa11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 PRRC1Q96M27 445 aa11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 LRRC37BQ96QE4 947 aa11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 SPAG4Q9NPE6 437 aa11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 ARL8BQ9NVJ2 186 aa11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 POU2F3Q9UKI9 436 aa11.12□□□□□ -0.63
PRPF40A-203ENST00000448428 TEP1Q99973 2627 aaKnown RBP11.11□□□□□ -0.63
PRPF40A-203ENST00000448428 IGHV1-18A0A0C4DH31 117 aa11.11□□□□□ -0.63
PRPF40A-203ENST00000448428 ZNF99A8MXY4 864 aaPredicted RBP11.11□□□□□ -0.63
PRPF40A-203ENST00000448428 FFAR1O14842 300 aa11.11□□□□□ -0.63
PRPF40A-203ENST00000448428 SEC14L2O76054 403 aa11.11□□□□□ -0.63
PRPF40A-203ENST00000448428 OR7A10O76100 309 aa11.11□□□□□ -0.63
PRPF40A-203ENST00000448428 IGF2P01344 180 aa11.11□□□□□ -0.63
PRPF40A-203ENST00000448428 IFNW1P05000 195 aa11.11□□□□□ -0.63
PRPF40A-203ENST00000448428 ATP5J2P56134 94 aa11.11□□□□□ -0.63
PRPF40A-203ENST00000448428 LSM11P83369 360 aaKnown RBP eCLIP11.11□□□□□ -0.63
PRPF40A-203ENST00000448428 IFI44LQ53G44 452 aa11.11□□□□□ -0.63
PRPF40A-203ENST00000448428 GLYATQ6IB77 296 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms