RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 IDH3GP51553 393 aaPredicted RBP6.78□□□□□ -1.32
CD44-211ENST00000442151 NAAAQ02083 359 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 SCARB2Q14108 478 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 MAPK11Q15759 364 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 SWI5Q1ZZU3 235 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 TMEM249Q2WGJ8 235 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 IQCCQ4KMZ1 466 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 AGKQ53H12 422 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 BEND6Q5SZJ8 279 aaPredicted RBP6.78□□□□□ -1.32
CD44-211ENST00000442151 METTL21CQ5VZV1 264 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 FAM166AQ6J272 317 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 TTC33Q6PID6 262 aaPredicted RBP6.78□□□□□ -1.32
CD44-211ENST00000442151 SLC2A7Q6PXP3 512 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 VASH1Q7L8A9 365 aaPredicted RBP6.78□□□□□ -1.32
CD44-211ENST00000442151 CXXC5Q7LFL8 322 aaKnown RBP6.78□□□□□ -1.32
CD44-211ENST00000442151 PXKQ7Z7A4 578 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 PATL1Q86TB9 770 aaKnown RBP6.78□□□□□ -1.32
CD44-211ENST00000442151 TEX29Q8N6K0 151 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 NFKBIDQ8NI38 313 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 VRK1Q99986 396 aaPredicted RBP6.78□□□□□ -1.32
CD44-211ENST00000442151 LRMDAQ9H2I8 198 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 MS4A5Q9H3V2 200 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 GPR35Q9HC97 309 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 CA10Q9NS85 328 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 STX18Q9P2W9 335 aaKnown RBP6.78□□□□□ -1.32
CD44-211ENST00000442151 CMAHPQ9Y471 501 aa6.78□□□□□ -1.32
CD44-211ENST00000442151 MAP1AP78559 2803 aaPredicted RBP6.77□□□□□ -1.33
CD44-211ENST00000442151 IGHV4-30-2A0A087WSY4 118 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 IGHV1-18A0A0C4DH31 117 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 A0A1B0GWA3 101 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 ZNF99A8MXY4 864 aaPredicted RBP6.77□□□□□ -1.33
CD44-211ENST00000442151 HMGB1P1B2RPK0 211 aaPredicted RBP6.77□□□□□ -1.33
CD44-211ENST00000442151 FTCDNL1E5RQL4 147 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 ATP6V1G2-DDX39BF2Z307 99 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 NR5A2O00482 541 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 LMX1BO60663 402 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 UBL3O95164 117 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 FARS2O95363 451 aaKnown RBP6.77□□□□□ -1.33
CD44-211ENST00000442151 IGLV1-44P01699 117 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 OR4A8P0C604 315 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 APEHP13798 732 aaKnown RBP6.77□□□□□ -1.33
CD44-211ENST00000442151 CAPZA2P47755 286 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 P2RY4P51582 365 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 ARF1P84077 181 aaKnown RBP6.77□□□□□ -1.33
CD44-211ENST00000442151 GALK2Q01415 458 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 SCGB2A2Q13296 93 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 CYLC2Q14093 348 aaPredicted RBP6.77□□□□□ -1.33
CD44-211ENST00000442151 NPTX1Q15818 432 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 MMEL1Q495T6 779 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 HIKESHIQ53FT3 197 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 C4orf48Q5BLP8 95 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 FREM1Q5H8C1 2179 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 RPS26P11Q5JNZ5 115 aaPredicted RBP6.77□□□□□ -1.33
CD44-211ENST00000442151 C6orf52Q5T4I8 152 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 UNQ6126/PRO20091Q6UXV3 157 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 LINC00114Q6XXX2 140 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 PRIMA1Q86XR5 153 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 OR1J2Q8NGS2 313 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 OR6N1Q8NGY5 312 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 MPP4Q96JB8 637 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 ATP6V1G3Q96LB4 118 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 KCNN2Q9H2S1 579 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 C1orf198Q9H425 327 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 DYNLRB1Q9NP97 96 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 INTS9Q9NV88 658 aaKnown RBP6.77□□□□□ -1.33
CD44-211ENST00000442151 MRPL39Q9NYK5 338 aaKnown RBP6.77□□□□□ -1.33
CD44-211ENST00000442151 AP3M1Q9Y2T2 418 aa6.77□□□□□ -1.33
CD44-211ENST00000442151 RNF212BA8MTL3 300 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 M0R082 166 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 UPK3AO75631 287 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 ZNF432O94892 652 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 NPPAP01160 153 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 IGKV3-15P01624 115 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 NR2C1P13056 603 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 PRG2P13727 222 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 GRPRP30550 384 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 NR4A2P43354 598 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 CHN2P52757 468 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 AQP5P55064 265 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 FOXG1P55316 489 aaPredicted RBP6.76□□□□□ -1.33
CD44-211ENST00000442151 POU3F1Q03052 451 aaPredicted RBP6.76□□□□□ -1.33
CD44-211ENST00000442151 PLAURQ03405 335 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 DAG1Q14118 895 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 OR1Q1Q15612 314 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 CARTPTQ16568 116 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 CYP51A1Q16850 503 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 CEACAM16Q2WEN9 425 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 RUNDC3AQ59EK9 446 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 LIPNQ5VXI9 398 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 HDXQ7Z353 690 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 PIWIL3Q7Z3Z3 882 aaKnown RBP6.76□□□□□ -1.33
CD44-211ENST00000442151 C20orf196Q8IYI0 205 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 ZNF417Q8TAU3 575 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 TAAR8Q969N4 342 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 KTI12Q96EK9 354 aaPredicted RBP6.76□□□□□ -1.33
CD44-211ENST00000442151 ZNF587Q96SQ5 575 aaPredicted RBP6.76□□□□□ -1.33
CD44-211ENST00000442151 SLC19A3Q9BZV2 496 aa6.76□□□□□ -1.33
CD44-211ENST00000442151 POLR2J2Q9GZM3 115 aaKnown RBP6.76□□□□□ -1.33
CD44-211ENST00000442151 POLR2J3Q9H1A7 115 aaKnown RBP6.76□□□□□ -1.33
CD44-211ENST00000442151 PLK3Q9H4B4 646 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms