RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 KLHDC2Q9Y2U9 406 aa18.2■□□□□ 0.5
USP39-204ENST00000409766 CPAMD8Q8IZJ3 1885 aa18.19■□□□□ 0.5
USP39-204ENST00000409766 C2orf72A6NCS6 295 aa18.19■□□□□ 0.5
USP39-204ENST00000409766 ANKUB1A6NFN9 424 aa18.19■□□□□ 0.5
USP39-204ENST00000409766 PSMD9O00233 223 aa18.19■□□□□ 0.5
USP39-204ENST00000409766 ARHGEF9O43307 516 aa18.19■□□□□ 0.5
USP39-204ENST00000409766 GDF9O60383 454 aa18.19■□□□□ 0.5
USP39-204ENST00000409766 GATBO75879 557 aaKnown RBP18.19■□□□□ 0.5
USP39-204ENST00000409766 UCHL1P09936 223 aa18.19■□□□□ 0.5
USP39-204ENST00000409766 HOXD12P35452 270 aa18.19■□□□□ 0.5
USP39-204ENST00000409766 IL18Q14116 193 aa18.19■□□□□ 0.5
USP39-204ENST00000409766 IL11RAQ14626 422 aa18.19■□□□□ 0.5
USP39-204ENST00000409766 CDC20BQ86Y33 519 aa18.19■□□□□ 0.5
USP39-204ENST00000409766 Q8N402 240 aa18.19■□□□□ 0.5
USP39-204ENST00000409766 OR5L2Q8NGL0 311 aa18.19■□□□□ 0.5
USP39-204ENST00000409766 TMEM234Q8WY98 164 aa18.19■□□□□ 0.5
USP39-204ENST00000409766 OR11A1Q9GZK7 315 aa18.19■□□□□ 0.5
USP39-204ENST00000409766 GALNT9Q9HCQ5 603 aa18.19■□□□□ 0.5
USP39-204ENST00000409766 WDFY3Q8IZQ1 3526 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 LINC00854A0A1B0GVQ3 168 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 D6RAR5 112 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 GPRIN2O60269 458 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 HLA-DQB1P01920 261 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 PRKCAP17252 672 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 RAB3BP20337 219 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 C5orf46Q6UWT4 87 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 KCTD20Q7Z5Y7 419 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 CEP76Q8TAP6 659 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 ST8SIA1Q92185 356 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 A0A1W2PPK0 400 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 NTN3O00634 580 aaPredicted RBP18.18■□□□□ 0.5
USP39-204ENST00000409766 ARL6IP5O75915 188 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 CER1O95813 267 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 SLC2A2P11168 524 aaPredicted RBP18.18■□□□□ 0.5
USP39-204ENST00000409766 AHCYP23526 432 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 NANOS3P60323 173 aaKnown RBP18.18■□□□□ 0.5
USP39-204ENST00000409766 ACKR1Q16570 336 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 SLC25A35Q3KQZ1 300 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 SLC6A19Q695T7 634 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 UNQ9370/PRO34162Q6UXP9 181 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 PRR23CQ6ZRP0 262 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 EGFL6Q8IUX8 553 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 PM20D2Q8IYS1 436 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 ZNF519Q8TB69 540 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 ADAD1Q96M93 576 aaKnown RBP18.18■□□□□ 0.5
USP39-204ENST00000409766 NECAB3Q96P71 396 aaPredicted RBP18.18■□□□□ 0.5
USP39-204ENST00000409766 OR14A2Q96R54 314 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 NPAS1Q99742 590 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 CYSLTR2Q9NS75 346 aa18.18■□□□□ 0.5
USP39-204ENST00000409766 TVP23AA6NH52 213 aa18.17■□□□□ 0.5
USP39-204ENST00000409766 PLPP3O14495 311 aa18.17■□□□□ 0.5
USP39-204ENST00000409766 OR2T1O43869 369 aa18.17■□□□□ 0.5
USP39-204ENST00000409766 ZFAND5O76080 213 aa18.17■□□□□ 0.5
USP39-204ENST00000409766 AHSA1O95433 338 aa18.17■□□□□ 0.5
USP39-204ENST00000409766 CYC1P08574 325 aa18.17■□□□□ 0.5
USP39-204ENST00000409766 SUMO3P55854 103 aaPredicted RBP18.17■□□□□ 0.5
USP39-204ENST00000409766 RPL27P61353 136 aaKnown RBP18.17■□□□□ 0.5
USP39-204ENST00000409766 CARTPTQ16568 116 aa18.17■□□□□ 0.5
USP39-204ENST00000409766 TRIM61Q5EBN2 209 aa18.17■□□□□ 0.5
USP39-204ENST00000409766 LRRC28Q86X40 367 aaPredicted RBP18.17■□□□□ 0.5
USP39-204ENST00000409766 BMPERQ8N8U9 685 aa18.17■□□□□ 0.5
USP39-204ENST00000409766 TTC9Q92623 222 aa18.17■□□□□ 0.5
USP39-204ENST00000409766 MFRPQ9BY79 579 aa18.17■□□□□ 0.5
USP39-204ENST00000409766 SLC22A4Q9H015 551 aa18.17■□□□□ 0.5
USP39-204ENST00000409766 C11orf54Q9H0W9 315 aaPredicted RBP18.17■□□□□ 0.5
USP39-204ENST00000409766 B3GAT2Q9NPZ5 323 aa18.17■□□□□ 0.5
USP39-204ENST00000409766 SACM1LQ9NTJ5 587 aa18.17■□□□□ 0.5
USP39-204ENST00000409766 MYOTQ9UBF9 498 aa18.17■□□□□ 0.5
USP39-204ENST00000409766 C19orf25Q9UFG5 118 aaPredicted RBP18.17■□□□□ 0.5
USP39-204ENST00000409766 MRM2Q9UI43 246 aaKnown RBP18.17■□□□□ 0.5
USP39-204ENST00000409766 TECTAO75443 2155 aa18.17■□□□□ 0.5
USP39-204ENST00000409766 FAM25AB3EWG3 89 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 FAM25CB3EWG5 89 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 FAM25GB3EWG6 89 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 FTCDNL1E5RQL4 147 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 XKRYO14609 159 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 PLA2G10O15496 165 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 AKR7A3O95154 331 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 PLGP00747 810 aaPredicted RBP18.16■□□□□ 0.5
USP39-204ENST00000409766 TACSTD2P09758 323 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 DLX5P56178 289 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 CEP78Q5JTW2 689 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 IL20RBQ6UXL0 311 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 TRILQ7L0X0 811 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 CHAC2Q8WUX2 184 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 TXNIPQ9H3M7 391 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 ZCCHC4Q9H5U6 513 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 EXTL2Q9UBQ6 330 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 TNFSF12-TNFSF13A0A0A6YY99 330 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 PRSS37A4D1T9 235 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 UPK3AO75631 287 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 ABHD16AO95870 558 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 OR8G3PP0DMU2 310 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 ZNF28P17035 718 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 DUSP3P51452 185 aaPredicted RBP18.16■□□□□ 0.5
USP39-204ENST00000409766 BICRALQ6AI39 1079 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 LYPD8Q6UX82 237 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 ZNF417Q8TAU3 575 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 PHYHIPQ92561 330 aa18.16■□□□□ 0.5
USP39-204ENST00000409766 SNX18Q96RF0 628 aa18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms