RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 AJAP1Q9UKB5 411 aaPredicted RBP6.73□□□□□ -1.33
SCN9A-202ENST00000409435 EXO1Q9UQ84 846 aaKnown RBP6.73□□□□□ -1.33
SCN9A-202ENST00000409435 GFYI3L273 518 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 SULT1C4O75897 302 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 SLC22A5O76082 557 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 METTL15P1P0C7V9 234 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 IFNGR1P15260 489 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 MMP11P24347 488 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 ACP1P24666 158 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 RIDAP52758 137 aaKnown RBP6.73□□□□□ -1.33
SCN9A-202ENST00000409435 DESI1Q6ICB0 168 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 ZNF551Q7Z340 670 aaPredicted RBP6.73□□□□□ -1.33
SCN9A-202ENST00000409435 LAS2Q8IYD9 372 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 SLC43A2Q8N370 569 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 ZNF781Q8N8C0 355 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 ZNF454Q8N9F8 522 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 SLC30A7Q8NEW0 376 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 OR6Q1Q8NGQ2 317 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 OR13C2Q8NGS9 318 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 NEIL3Q8TAT5 605 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 LGALS12Q96DT0 336 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 MAN2C1Q9NTJ4 1040 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 DNAJB12Q9NXW2 375 aaKnown RBP6.73□□□□□ -1.33
SCN9A-202ENST00000409435 PRSS51A0A1B0GVH4 220 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 J3QLW9 94 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 C7P10643 843 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 CBR1P16152 277 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 PPP3CBP16298 524 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 ZNF19P17023 458 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 USF1P22415 310 aaPredicted RBP6.73□□□□□ -1.33
SCN9A-202ENST00000409435 THBS3P49746 956 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 CLDN17P56750 224 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 HABP2Q14520 560 aaPredicted RBP6.73□□□□□ -1.33
SCN9A-202ENST00000409435 ZNF480Q8WV37 535 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 FBXW5Q969U6 566 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 C14orf79Q96F83 325 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 TECTBQ96PL2 329 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 FIZ1Q96SL8 496 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 MTHFD2LQ9H903 347 aaPredicted RBP6.73□□□□□ -1.33
SCN9A-202ENST00000409435 TMEM74BQ9NUR3 256 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 PLEK2Q9NYT0 353 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 PCDHGA7Q9Y5G6 932 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 COL24A1Q17RW2 1714 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 A0A087WUU8 490 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 C1QTNF9BB2RNN3 333 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 HTR1AP08908 422 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 C1QTNF9P0C862 333 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 AOAHP28039 575 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 TEAD1P28347 426 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 PITPNBP48739 271 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 PTTG1IPP53801 180 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 CLDN15P56746 228 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 GABARAPL2P60520 117 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 ACTBP60709 375 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 GLO1Q04760 184 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 STEAP4Q687X5 459 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 OVCH1Q7RTY7 1134 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 KCTD20Q7Z5Y7 419 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 DTX3Q8N9I9 347 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 C16orf78Q8WTQ4 265 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 NEIL2Q969S2 332 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 OR51J1Q9H342 316 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 HRH4Q9H3N8 390 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 TNFRSF19Q9NS68 423 aa6.73□□□□□ -1.33
SCN9A-202ENST00000409435 C2orf72A6NCS6 295 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 C19orf67A6NJJ6 358 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 CBR3O75828 277 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 FABP1P07148 127 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 SELEP16581 610 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 IL3RAP26951 378 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 ELK4P28324 431 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 CCR7P32248 378 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 TNK1Q13470 666 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 ZNF791Q3KP31 576 aaPredicted RBP6.72□□□□□ -1.33
SCN9A-202ENST00000409435 CLEC12AQ5QGZ9 265 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 MEDAGQ5VYS4 303 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 ANKRD34AQ69YU3 496 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 OR2T5Q6IEZ7 315 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 DPY19L2P1Q6NXN4 242 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 FAM156AQ8NDB6 213 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 OR2T29Q8NH02 315 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 SSC4DQ8WTU2 575 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 SGK3Q96BR1 496 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 IL4I1Q96RQ9 567 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 SPIN2AQ99865 258 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 SPIN2BQ9BPZ2 258 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 LGALS13Q9UHV8 139 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 PRRC2BQ5JSZ5 2229 aaKnown RBP6.72□□□□□ -1.33
SCN9A-202ENST00000409435 CXorf51AA0A1B0GTR3 108 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 UGDHO60701 494 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 CNR1P21554 472 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 GIPRP48546 466 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 BAMBIQ13145 260 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 C1orf185Q5T7R7 199 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 FAM180BQ6P0A1 224 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 RFLNAQ6ZTI6 216 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 PIANPQ8IYJ0 282 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 OR1M1Q8NGA1 313 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 OR1L3Q8NH93 324 aa6.72□□□□□ -1.33
SCN9A-202ENST00000409435 SLC35B2Q8TB61 432 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms