RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 PCDHB10Q9UN67 800 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 RPH3AQ9Y2J0 694 aaPredicted RBP11.88□□□□□ -0.51
PTPRN-202ENST00000409251 ADAM18Q9Y3Q7 739 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 A8MVJ9 347 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 SIGLEC6O43699 453 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 MYF5P13349 255 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 CERS1P27544 350 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 EPHA4P54764 986 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 DPTQ07507 201 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 Q6ZSR6 202 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 RAB11FIP2Q7L804 512 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 OR13H1Q8NG92 308 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 ACOT11Q8WXI4 607 aaPredicted RBP11.88□□□□□ -0.51
PTPRN-202ENST00000409251 FAM3CQ92520 227 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 PTCHD1Q96NR3 888 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 TSSK2Q96PF2 358 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 IL21RQ9HBE5 538 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 A4GALTQ9NPC4 353 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 SIRT3Q9NTG7 399 aaPredicted RBP11.88□□□□□ -0.51
PTPRN-202ENST00000409251 PLXND1Q9Y4D7 1925 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 A0A0B4J2A0 478 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 PRSS38A1L453 326 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 B4DGG1 531 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 E9PQ18 207 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 EPPINO95925 133 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 MNDAP41218 407 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 PPT1P50897 306 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 MMP15P51511 669 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 KLF9Q13886 244 aaPredicted RBP11.88□□□□□ -0.51
PTPRN-202ENST00000409251 NIPAL3Q6P499 406 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 TAF8Q7Z7C8 310 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 RAB7BQ96AH8 199 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 VRK1Q99986 396 aaPredicted RBP11.88□□□□□ -0.51
PTPRN-202ENST00000409251 SIDT1Q9NXL6 827 aaKnown RBP11.88□□□□□ -0.51
PTPRN-202ENST00000409251 AKAP7Q9P0M2 348 aaPredicted RBP11.88□□□□□ -0.51
PTPRN-202ENST00000409251 SHPKQ9UHJ6 478 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 GPR34Q9UPC5 381 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 CAMK2AQ9UQM7 478 aa11.88□□□□□ -0.51
PTPRN-202ENST00000409251 KDM4EB2RXH2 506 aaPredicted RBP11.87□□□□□ -0.51
PTPRN-202ENST00000409251 SELENOFO60613 162 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 HLA-DQA2P01906 255 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 IFNGR1P15260 489 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 DLSTP36957 453 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 OR2B8PP59922 312 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 PLA2G7Q13093 441 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 GLDNQ6ZMI3 551 aaPredicted RBP11.87□□□□□ -0.51
PTPRN-202ENST00000409251 AMDHD1Q96NU7 426 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 OR7D2Q96RA2 312 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 TNFRSF13CQ96RJ3 184 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 WDR77Q9BQA1 342 aaPredicted RBP11.87□□□□□ -0.51
PTPRN-202ENST00000409251 ING1Q9UK53 422 aaPredicted RBP11.87□□□□□ -0.51
PTPRN-202ENST00000409251 SYT5O00445 386 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 DNAJB6O75190 326 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 CRYBA1P05813 215 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 SBK2P0C263 348 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 OR8G3PP0DMU2 310 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 VSIG10L2P0DP72 767 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 MAKP20794 623 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 PSMD4P55036 377 aaKnown RBP11.87□□□□□ -0.51
PTPRN-202ENST00000409251 POLR2GP62487 172 aaKnown RBP eCLIP11.87□□□□□ -0.51
PTPRN-202ENST00000409251 DUSP2Q05923 314 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 MRM1Q6IN84 353 aaKnown RBP11.87□□□□□ -0.51
PTPRN-202ENST00000409251 OR51D1Q8NGF3 324 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 GOT1L1Q8NHS2 421 aaPredicted RBP11.87□□□□□ -0.51
PTPRN-202ENST00000409251 TMED6Q8WW62 240 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 COX14Q96I36 57 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 SRMSQ9H3Y6 488 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 SRA1Q9HD15 236 aaKnown RBP11.87□□□□□ -0.51
PTPRN-202ENST00000409251 OPN4Q9UHM6 478 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 TVP23AA6NH52 213 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 PRKNO60260 465 aaPredicted RBP11.87□□□□□ -0.51
PTPRN-202ENST00000409251 GIPP09681 153 aaPredicted RBP11.87□□□□□ -0.51
PTPRN-202ENST00000409251 ZNF3P17036 446 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 BMP8BP34820 402 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 FOXK2Q01167 660 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 DEFB134Q4QY38 66 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 ETV3LQ6ZN32 361 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 ZNF836Q6ZNA1 936 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 BMP8AQ7Z5Y6 402 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 LRRC56Q8IYG6 542 aaPredicted RBP11.87□□□□□ -0.51
PTPRN-202ENST00000409251 ZNF511Q8NB15 262 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 UBE2E3Q969T4 207 aa11.87□□□□□ -0.51
PTPRN-202ENST00000409251 ARRDC5A6NEK1 342 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 LRRC72A6NJI9 287 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 ELOA3DA6NLF2 546 aaPredicted RBP11.86□□□□□ -0.51
PTPRN-202ENST00000409251 BLOC1S5-TXNDC5H3BN57 136 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 H7C1C5 153 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 AMY2AP04746 511 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 RPN2P04844 631 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 PTBP1P26599 531 aaKnown RBP eCLIP11.86□□□□□ -0.51
PTPRN-202ENST00000409251 BDKRB2P30411 391 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 FXYD6P3P58550 94 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 LCN6P62502 163 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 BTN3A2P78410 334 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 ELOA3BQ3SY89 546 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 GTPBP8Q8N3Z3 284 aaPredicted RBP11.86□□□□□ -0.51
PTPRN-202ENST00000409251 ZNF676Q8N7Q3 588 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 TEX19Q8NA77 164 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 ELOA3Q8NG57 546 aa11.86□□□□□ -0.51
PTPRN-202ENST00000409251 OR2AK2Q8NG84 335 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms