RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 PTGDR2Q9Y5Y4 395 aa3.5□□□□□ -1.85
HMGB1-204ENST00000399489 LRPPRCP42704 1394 aaKnown RBP3.5□□□□□ -1.85
HMGB1-204ENST00000399489 DENND4BO75064 1496 aaPredicted RBP3.49□□□□□ -1.85
HMGB1-204ENST00000399489 MED1Q15648 1581 aaPredicted RBP3.49□□□□□ -1.85
HMGB1-204ENST00000399489 UHRF1BP1Q6BDS2 1440 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 OR5H15A6NDH6 313 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 GLTPD2A6NH11 291 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 E5RI56 91 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 LRRN3E7EW58 273 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 EI24O14681 340 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 ADAP1O75689 374 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 CDK2AP2O75956 126 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 IFNA6P05013 189 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 CD3GP09693 182 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 LINC00271P0C7V0 271 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 RD3LP0DJH9 198 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 SMIM10L1P0DMW3 83 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 FGF3P11487 239 aaPredicted RBP3.49□□□□□ -1.85
HMGB1-204ENST00000399489 HLA-DOBP13765 273 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 PGAM1P18669 254 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 PRPS1L1P21108 318 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 CA6P23280 308 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 G0S2P27469 103 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 HTR2CP28335 458 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 EPHX2P34913 555 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 NBL1P41271 181 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 ACTR1BP42025 376 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 GPR1P46091 355 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 CRISP1P54107 249 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 RIPK4P57078 832 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 RPS15AP62244 130 aaKnown RBP3.49□□□□□ -1.85
HMGB1-204ENST00000399489 VSNL1P62760 191 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 SLC17A1Q14916 467 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 FAM189A2Q15884 450 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 ZBTB6Q15916 424 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 QRICH1Q2TAL8 776 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 GOLGA7BQ2TAP0 167 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 PAN3Q58A45 887 aaKnown RBP3.49□□□□□ -1.85
HMGB1-204ENST00000399489 COQ5Q5HYK3 327 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 PPM1LQ5SGD2 360 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 CEP85LQ5SZL2 805 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 SEL1L2Q5TEA6 688 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 KHDRBS2Q5VWX1 349 aaKnown RBP3.49□□□□□ -1.85
HMGB1-204ENST00000399489 Q6ZTK2 550 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 TSEN54Q7Z6J9 526 aaKnown RBP3.49□□□□□ -1.85
HMGB1-204ENST00000399489 BOD1L2Q8IYS8 172 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 MCOLN2Q8IZK6 566 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 SLC39A11Q8N1S5 342 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 METTL4Q8N3J2 472 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 DNAJC22Q8N4W6 341 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 KIR3DL3Q8N743 410 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 NECAP1Q8NC96 275 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 FBXO25Q8TCJ0 367 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 SMARCD2Q92925 531 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 TADA1Q96BN2 335 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 ZBED6CLQ96FA7 236 aaPredicted RBP3.49□□□□□ -1.85
HMGB1-204ENST00000399489 SMIM10Q96HG1 83 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 URB1-AS1Q96HZ7 61 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 SERPINB11Q96P15 392 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 CYP2S1Q96SQ9 504 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 OVOL2Q9BRP0 275 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 FOLH1BQ9HBA9 442 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 RHBDL2Q9NX52 303 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 ZNF224Q9NZL3 707 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 ABCD2Q9UBJ2 740 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 LNPEPQ9UIQ6 1025 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 KCNS2Q9ULS6 477 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 MAGI2Q86UL8 1455 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 NCOA1Q15788 1441 aa3.49□□□□□ -1.85
HMGB1-204ENST00000399489 TAF1P21675 1872 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 RAPGEF2Q9Y4G8 1499 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 TMEM272A0A1B0GTI8 110 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 A0A1W2PRF3 423 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 A0A1W2PRM7 423 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 SLC22A20A6NK97 555 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 SMIM23A6NLE4 172 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 ERI2A8K979 691 aaKnown RBP3.48□□□□□ -1.85
HMGB1-204ENST00000399489 M0QXV9 152 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 LIN7AO14910 233 aaPredicted RBP3.48□□□□□ -1.85
HMGB1-204ENST00000399489 ATP8B1O43520 1251 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 PFKFB2O60825 505 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 ZMPSTE24O75844 475 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 GP1BAP07359 652 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 SLC35E2BP0CK96 405 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 TNFRSF1BP20333 461 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 MT3P25713 68 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 IVDP26440 423 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 GTF2H1P32780 548 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 PCK1P35558 622 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 ZFP36L2P47974 494 aaKnown RBP3.48□□□□□ -1.85
HMGB1-204ENST00000399489 AMTP48728 403 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 MLF1P58340 268 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 RPL24P83731 157 aaKnown RBP3.48□□□□□ -1.85
HMGB1-204ENST00000399489 TRAF2Q12933 501 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 NAB1Q13506 487 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 EIF2B1Q14232 305 aaKnown RBP3.48□□□□□ -1.85
HMGB1-204ENST00000399489 RAB35Q15286 201 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 TIGITQ495A1 244 aa3.48□□□□□ -1.85
HMGB1-204ENST00000399489 ZNF672Q499Z4 452 aaPredicted RBP3.48□□□□□ -1.85
HMGB1-204ENST00000399489 FAM106AQ4KMX7 169 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms