RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 MS4A2Q01362 244 aa19.1■□□□□ 0.65
CLN3-207ENST00000395653 STK11Q15831 433 aa19.1■□□□□ 0.65
CLN3-207ENST00000395653 BEX5Q5H9J7 111 aa19.1■□□□□ 0.65
CLN3-207ENST00000395653 ZNF730Q6ZMV8 503 aa19.1■□□□□ 0.65
CLN3-207ENST00000395653 CDC20BQ86Y33 519 aa19.1■□□□□ 0.65
CLN3-207ENST00000395653 SLC7A13Q8TCU3 470 aa19.1■□□□□ 0.65
CLN3-207ENST00000395653 POP5Q969H6 163 aaKnown RBP19.1■□□□□ 0.65
CLN3-207ENST00000395653 CLPTM1LQ96KA5 538 aa19.1■□□□□ 0.65
CLN3-207ENST00000395653 ALKBH3Q96Q83 286 aaPredicted RBP19.1■□□□□ 0.65
CLN3-207ENST00000395653 BTBD10Q9BSF8 475 aa19.1■□□□□ 0.65
CLN3-207ENST00000395653 IL1RAPQ9NPH3 570 aa19.1■□□□□ 0.65
CLN3-207ENST00000395653 POLQO75417 2590 aa19.09■□□□□ 0.65
CLN3-207ENST00000395653 TCRBV5S2A0A599 114 aa19.09■□□□□ 0.65
CLN3-207ENST00000395653 SLC35F4A4IF30 521 aa19.09■□□□□ 0.65
CLN3-207ENST00000395653 BLOC1S5-TXNDC5H3BN57 136 aa19.09■□□□□ 0.65
CLN3-207ENST00000395653 KLF4O43474 513 aa19.09■□□□□ 0.65
CLN3-207ENST00000395653 UPK3AO75631 287 aa19.09■□□□□ 0.65
CLN3-207ENST00000395653 SERPINI2O75830 405 aa19.09■□□□□ 0.65
CLN3-207ENST00000395653 DIRAS1O95057 198 aa19.09■□□□□ 0.65
CLN3-207ENST00000395653 RPL18Q07020 188 aaKnown RBP19.09■□□□□ 0.65
CLN3-207ENST00000395653 LGALS3BPQ08380 585 aa19.09■□□□□ 0.65
CLN3-207ENST00000395653 C9orf135Q5VTT2 229 aa19.09■□□□□ 0.65
CLN3-207ENST00000395653 C17orf78Q8N4C9 275 aa19.09■□□□□ 0.65
CLN3-207ENST00000395653 CCDC124Q96CT7 223 aaKnown RBP19.09■□□□□ 0.65
CLN3-207ENST00000395653 PIK3IP1Q96FE7 263 aa19.09■□□□□ 0.65
CLN3-207ENST00000395653 TXNDC15Q96J42 360 aa19.09■□□□□ 0.65
CLN3-207ENST00000395653 LRR1Q96L50 414 aa19.09■□□□□ 0.65
CLN3-207ENST00000395653 ADAD1Q96M93 576 aaKnown RBP19.09■□□□□ 0.65
CLN3-207ENST00000395653 EMC6Q9BV81 110 aa19.09■□□□□ 0.65
CLN3-207ENST00000395653 NGBQ9NPG2 151 aa19.09■□□□□ 0.65
CLN3-207ENST00000395653 CSMD2Q7Z408 3487 aa19.09■□□□□ 0.65
CLN3-207ENST00000395653 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP19.08■□□□□ 0.65
CLN3-207ENST00000395653 RPL36A-HNRNPH2H7BZ11 118 aa19.08■□□□□ 0.65
CLN3-207ENST00000395653 IFNGR1P15260 489 aa19.08■□□□□ 0.65
CLN3-207ENST00000395653 PPA1Q15181 289 aa19.08■□□□□ 0.65
CLN3-207ENST00000395653 FGD3Q5JSP0 725 aa19.08■□□□□ 0.65
CLN3-207ENST00000395653 C1QTNF12Q5T7M4 302 aa19.08■□□□□ 0.65
CLN3-207ENST00000395653 TBPL2Q6SJ96 375 aa19.08■□□□□ 0.65
CLN3-207ENST00000395653 SEZ6L2Q6UXD5 910 aa19.08■□□□□ 0.65
CLN3-207ENST00000395653 SLC35D2Q76EJ3 337 aa19.08■□□□□ 0.65
CLN3-207ENST00000395653 LINGO2Q7L985 606 aa19.08■□□□□ 0.65
CLN3-207ENST00000395653 RRM2BQ7LG56 351 aa19.08■□□□□ 0.65
CLN3-207ENST00000395653 PIWIL3Q7Z3Z3 882 aaKnown RBP19.08■□□□□ 0.65
CLN3-207ENST00000395653 CDK20Q8IZL9 346 aa19.08■□□□□ 0.65
CLN3-207ENST00000395653 GPR137CQ8N3F9 429 aa19.08■□□□□ 0.65
CLN3-207ENST00000395653 MUCL1Q96DR8 90 aa19.08■□□□□ 0.65
CLN3-207ENST00000395653 BOD1Q96IK1 185 aa19.08■□□□□ 0.65
CLN3-207ENST00000395653 ZNF347Q96SE7 839 aa19.08■□□□□ 0.65
CLN3-207ENST00000395653 HIF3AQ9Y2N7 669 aa19.08■□□□□ 0.65
CLN3-207ENST00000395653 PDZD2O15018 2839 aa19.08■□□□□ 0.65
CLN3-207ENST00000395653 ZNF726A6NNF4 738 aa19.08■□□□□ 0.64
CLN3-207ENST00000395653 STAMBPO95630 424 aa19.08■□□□□ 0.64
CLN3-207ENST00000395653 SAGP10523 405 aaPredicted RBP19.08■□□□□ 0.64
CLN3-207ENST00000395653 MAKP20794 623 aa19.08■□□□□ 0.64
CLN3-207ENST00000395653 LOXP28300 417 aaPredicted RBP19.08■□□□□ 0.64
CLN3-207ENST00000395653 NR1H2P55055 460 aa19.08■□□□□ 0.64
CLN3-207ENST00000395653 SMIM11AP58511 58 aa19.08■□□□□ 0.64
CLN3-207ENST00000395653 RPS4XP62701 263 aaKnown RBP19.08■□□□□ 0.64
CLN3-207ENST00000395653 TRAP1Q12931 704 aaKnown RBP19.08■□□□□ 0.64
CLN3-207ENST00000395653 ANKDD1AQ495B1 522 aa19.08■□□□□ 0.64
CLN3-207ENST00000395653 HMBOX1Q6NT76 420 aa19.08■□□□□ 0.64
CLN3-207ENST00000395653 PGM2L1Q6PCE3 622 aa19.08■□□□□ 0.64
CLN3-207ENST00000395653 PODNL1Q6PEZ8 512 aa19.08■□□□□ 0.64
CLN3-207ENST00000395653 ZDHHC21Q8IVQ6 265 aa19.08■□□□□ 0.64
CLN3-207ENST00000395653 C20orf196Q8IYI0 205 aa19.08■□□□□ 0.64
CLN3-207ENST00000395653 OR6X1Q8NH79 312 aa19.08■□□□□ 0.64
CLN3-207ENST00000395653 SEPHS2Q99611 448 aa19.08■□□□□ 0.64
CLN3-207ENST00000395653 MAGIXQ9H6Y5 334 aa19.08■□□□□ 0.64
CLN3-207ENST00000395653 TMEM5Q9Y2B1 443 aa19.08■□□□□ 0.64
CLN3-207ENST00000395653 ABCA4P78363 2273 aa19.07■□□□□ 0.64
CLN3-207ENST00000395653 EFCAB9A8MZ26 197 aa19.07■□□□□ 0.64
CLN3-207ENST00000395653 ACOT8O14734 319 aa19.07■□□□□ 0.64
CLN3-207ENST00000395653 AQP2P41181 271 aa19.07■□□□□ 0.64
CLN3-207ENST00000395653 SLC9A3P48764 834 aa19.07■□□□□ 0.64
CLN3-207ENST00000395653 SH3BGRP55822 239 aaPredicted RBP19.07■□□□□ 0.64
CLN3-207ENST00000395653 BIDP55957 195 aa19.07■□□□□ 0.64
CLN3-207ENST00000395653 ROR2Q01974 943 aaKnown RBP19.07■□□□□ 0.64
CLN3-207ENST00000395653 TMPRSS11FQ6ZWK6 438 aa19.07■□□□□ 0.64
CLN3-207ENST00000395653 LRGUKQ96M69 825 aa19.07■□□□□ 0.64
CLN3-207ENST00000395653 FUZQ9BT04 418 aa19.07■□□□□ 0.64
CLN3-207ENST00000395653 INIPQ9NRY2 104 aa19.07■□□□□ 0.64
CLN3-207ENST00000395653 TRBV4-1A0A0J9YWV2 114 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 A0A1W2PPR1 153 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 NPIPB13A6NJU9 1138 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 NPIPB4C9JG80 1138 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 DNAJC8O75937 253 aaPredicted RBP19.06■□□□□ 0.64
CLN3-207ENST00000395653 ATP5HO75947 161 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 GADD45GO95257 159 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 BCL10O95999 233 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 MAGEA2P43356 314 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 RASSF2P50749 326 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 SPIBQ01892 262 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 CAMK2DQ13557 499 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 CARD17Q5XLA6 110 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 ALKBH2Q6NS38 261 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 WDFY1Q8IWB7 410 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 OR1K1Q8NGR3 316 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 MOSPD2Q8NHP6 518 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 PLPPR2Q96GM1 343 aa19.06■□□□□ 0.64
CLN3-207ENST00000395653 HS3ST6Q96QI5 342 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms