RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CHRNA9Q9UGM1 479 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 AK3Q9UIJ7 227 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 CHD2O14647 1828 aaKnown RBP11□□□□□ -0.65
SYNPO-202ENST00000394243 KIF1AQ12756 1690 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 TRAF3IP2O43734 574 aaPredicted RBP11□□□□□ -0.65
SYNPO-202ENST00000394243 ELAVL4P26378 380 aaKnown RBP11□□□□□ -0.65
SYNPO-202ENST00000394243 UBE2MP61081 183 aaKnown RBP11□□□□□ -0.65
SYNPO-202ENST00000394243 SLC35A2P78381 396 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 MRPL2Q5T653 305 aaKnown RBP11□□□□□ -0.65
SYNPO-202ENST00000394243 ZBTB37Q5TC79 503 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 OR52R1Q8NGF1 315 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 MBOAT4Q96T53 435 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 OPA3Q9H6K4 179 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 OR14J1Q9UGF5 321 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 MRPS28Q9Y2Q9 187 aaKnown RBP11□□□□□ -0.65
SYNPO-202ENST00000394243 FAM96BQ9Y3D0 163 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 NAGAP17050 411 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 DGCR2P98153 550 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 YOD1Q5VVQ6 348 aaPredicted RBP11□□□□□ -0.65
SYNPO-202ENST00000394243 OPN5Q6U736 354 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 LCTLQ6UWM7 567 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 MOB1BQ7L9L4 216 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 CDH20Q9HBT6 801 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 ZNF331Q9NQX6 463 aaPredicted RBP11□□□□□ -0.65
SYNPO-202ENST00000394243 SLC2A4RGQ9NR83 387 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 ZNF586Q9NXT0 402 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 TAS2R5Q9NYW4 299 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 SH3BGRL2Q9UJC5 107 aa11□□□□□ -0.65
SYNPO-202ENST00000394243 ZNF816-ZNF321PA0A0X1KG74 233 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 RNF212BA8MTL3 300 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 H7C1C5 153 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 LCN6P62502 163 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 PLAC9Q5JTB6 97 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 GLYATL3Q5SZD4 288 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 COL13A1Q5TAT6 717 aaPredicted RBP10.99□□□□□ -0.65
SYNPO-202ENST00000394243 ZNF321PQ8N8H1 164 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 OR9K2Q8NGE7 335 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 OR5D18Q8NGL1 313 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 B4GALT7Q9UBV7 327 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 TRAPPC2LH3BP13 241 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 ACHEP22303 614 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 PTAFRP25105 342 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 CHRNEQ04844 493 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 Q6ZRG5 221 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 MRPL10Q7Z7H8 261 aaKnown RBP10.99□□□□□ -0.65
SYNPO-202ENST00000394243 GCNT2Q8N0V5 402 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 ADAMTS18Q8TE60 1221 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 FAM122AQ96E09 287 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 FIZ1Q96SL8 496 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 C1orf198Q9H425 327 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 IL17CQ9P0M4 197 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 IGFBP1P08833 259 aaPredicted RBP10.99□□□□□ -0.65
SYNPO-202ENST00000394243 METTL15P1P0C7V9 234 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 CALCRP30988 508 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 IL2RGP31785 369 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 APLNRP35414 380 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 HNRNPA3P51991 378 aaKnown RBP10.99□□□□□ -0.65
SYNPO-202ENST00000394243 TMEM123Q8N131 208 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 CABLES2Q9BTV7 478 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 PRSS21Q9Y6M0 314 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 NINQ8N4C6 2090 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 RNGTTO60942 597 aaKnown RBP10.99□□□□□ -0.65
SYNPO-202ENST00000394243 LGI1O95970 557 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 TPOP07202 933 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 ZP3P21754 424 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 ACKR3P25106 362 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 HOXA1P49639 335 aaPredicted RBP10.99□□□□□ -0.65
SYNPO-202ENST00000394243 GATMP50440 423 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 MTCP1P56278 107 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 GRB2P62993 217 aaKnown RBP10.99□□□□□ -0.65
SYNPO-202ENST00000394243 SRPXP78539 464 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 CTSL3PQ5NE16 218 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 RPUSD3Q6P087 351 aaKnown RBP10.99□□□□□ -0.65
SYNPO-202ENST00000394243 PLPP7Q8NBV4 271 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 TNFRSF13CQ96RJ3 184 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 RAB9BQ9NP90 201 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 SLC35D1Q9NTN3 355 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 SLC23A1Q9UHI7 598 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 SCML1Q9UN30 329 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 FLVCR2Q9UPI3 526 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 A0A1W2PQU0 124 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 NPIPB15A6NHN6 443 aaPredicted RBP10.99□□□□□ -0.65
SYNPO-202ENST00000394243 GPX5O75715 221 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 CBX7O95931 251 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 CSNK1A1P48729 337 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 CLEC12BQ2HXU8 276 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 BTNL8Q6UX41 500 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 MBOAT2Q6ZWT7 520 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 OR51A4Q8NGJ6 313 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 MAP3K3Q99759 626 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 WWTR1Q9GZV5 400 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 CLCF1Q9UBD9 225 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 NEURL4Q96JN8 1562 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 POM121BA6NF01 834 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 GJE1A6NN92 205 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 TOX4O94842 621 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 CSF3P09919 207 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 FOXK1P85037 733 aa10.99□□□□□ -0.65
SYNPO-202ENST00000394243 ALKBH1Q13686 389 aaKnown RBP10.99□□□□□ -0.65
SYNPO-202ENST00000394243 ELOCQ15369 112 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms