RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 SRMP19623 302 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 SDHAP31040 664 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 CLDN12P56749 244 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 RPS15P62841 145 aaKnown RBP12.14□□□□□ -0.47
CCDC3-202ENST00000378839 CDK10Q15131 360 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 HES5Q5TA89 166 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 CADM4Q8NFZ8 388 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 LGALS14Q8TCE9 139 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 MS4A3Q96HJ5 214 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 ABCG5Q9H222 651 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 SLC22A11Q9NSA0 550 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 MCUBQ9NWR8 336 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 CTSFQ9UBX1 484 aa12.14□□□□□ -0.47
CCDC3-202ENST00000378839 PCDHGA9Q9Y5G4 932 aaKnown RBP12.14□□□□□ -0.47
CCDC3-202ENST00000378839 H3BSH0 61 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 FLRT2O43155 660 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 ZNF354AO60765 605 aaPredicted RBP12.13□□□□□ -0.47
CCDC3-202ENST00000378839 SLC43A1O75387 559 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 PRKACBP22694 351 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 HNRNPKP61978 463 aaKnown RBP eCLIP12.13□□□□□ -0.47
CCDC3-202ENST00000378839 FAM199XQ6PEV8 388 aaPredicted RBP12.13□□□□□ -0.47
CCDC3-202ENST00000378839 ZNF527Q8NB42 609 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 ZFP3Q96NJ6 502 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 PTDSS2Q9BVG9 487 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 VN1R1Q9GZP7 353 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 AUNIPQ9H7T9 357 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 UBE2ZQ9H832 354 aaPredicted RBP12.13□□□□□ -0.47
CCDC3-202ENST00000378839 RXFP3Q9NSD7 469 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 MRPS7Q9Y2R9 242 aaKnown RBP12.13□□□□□ -0.47
CCDC3-202ENST00000378839 CEP192Q8TEP8 1941 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 ADAMTS20P59510 1910 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 A0A0A6YYJ9 748 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 INMT-MINDY4F8WBC2 141 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 HCRTR2O43614 444 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 BGLAPP02818 100 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 SLC25A1P53007 311 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 LGALS3BPQ08380 585 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 IL10RAQ13651 578 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 NSDHLQ15738 373 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 KRT74Q7RTS7 529 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 SIAH3Q8IW03 269 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 CMTM4Q8IZR5 234 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 OR10AC1Q8NH08 325 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 ZNF563Q8TA94 476 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 OR1F2PQ96R84 312 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 PELOQ9BRX2 385 aaKnown RBP12.13□□□□□ -0.47
CCDC3-202ENST00000378839 LAT2Q9GZY6 243 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 MMACHCQ9Y4U1 282 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 CACNG2Q9Y698 323 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 TP53BP1Q12888 1972 aaPredicted RBP12.13□□□□□ -0.47
CCDC3-202ENST00000378839 UNC13CQ8NB66 2214 aa12.13□□□□□ -0.47
CCDC3-202ENST00000378839 NUP210LQ5VU65 1888 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 OR6C70A6NIJ9 312 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 TXNDC12O95881 172 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 CD1AP06126 327 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 ADRA2CP18825 462 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 TALDO1P37837 337 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 HTR2BP41595 481 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 PLA2G7Q13093 441 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 ELAVL1Q15717 326 aaKnown RBP12.12□□□□□ -0.47
CCDC3-202ENST00000378839 HSD17B12Q53GQ0 312 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 OVCH1Q7RTY7 1134 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 CDC20BQ86Y33 519 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 WDFY1Q8IWB7 410 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 D2HGDHQ8N465 521 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 ATOH1Q92858 354 aaPredicted RBP12.12□□□□□ -0.47
CCDC3-202ENST00000378839 SLC25A38Q96DW6 304 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 NUDT22Q9BRQ3 303 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 WWTR1Q9GZV5 400 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP12.12□□□□□ -0.47
CCDC3-202ENST00000378839 SPEF1Q9Y4P9 236 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 ARID1BQ8NFD5 2236 aaPredicted RBP12.12□□□□□ -0.47
CCDC3-202ENST00000378839 COL5A1P20908 1838 aaPredicted RBP12.12□□□□□ -0.47
CCDC3-202ENST00000378839 ZNF879B4DU55 563 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 IGF2P01344 180 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 INPP1P49441 399 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 GPLD1P80108 840 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 SHBQ15464 509 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 LIPNQ5VXI9 398 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 PYHIN1Q6K0P9 492 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 LRRC69Q6ZNQ3 347 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 SLC16A9Q7RTY1 509 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 JAZF1Q86VZ6 243 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 SLC38A9Q8NBW4 561 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 CCDC120Q96HB5 630 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 SYT4Q9H2B2 425 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 TEKT2Q9UIF3 430 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 RABL2BQ9UNT1 228 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 TRAV6A0A075B6T7 132 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 SERPINA3P01011 423 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 SYPP08247 313 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 DPP4P27487 766 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 ABCD3P28288 659 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 EPHA4P54764 986 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 TMEM255AQ5JRV8 349 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 COX15Q7KZN9 410 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 PM20D2Q8IYS1 436 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 TCTE3Q8IZS6 198 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 ZNF441Q8N8Z8 693 aa12.12□□□□□ -0.47
CCDC3-202ENST00000378839 OR51A4Q8NGJ6 313 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms