RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 ZNF735P0CB33 412 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 CHTF8P0CG12 524 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 RPS2P15880 293 aaKnown RBP1.4□□□□□ -2.19
VPS13A-206ENST00000376646 TBPP20226 339 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 KITLGP21583 273 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 ATP5C1P36542 298 aaKnown RBP1.4□□□□□ -2.19
VPS13A-206ENST00000376646 SUCLG1P53597 346 aaKnown RBP1.4□□□□□ -2.19
VPS13A-206ENST00000376646 DLX1P56177 255 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 ACVR1Q04771 509 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 RNASEKQ6P5S7 137 aaKnown RBP1.4□□□□□ -2.19
VPS13A-206ENST00000376646 TRIM40Q6P9F5 258 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 LRRC74BQ6ZQY2 392 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 THOC6Q86W42 341 aaKnown RBP1.4□□□□□ -2.19
VPS13A-206ENST00000376646 TMEM61Q8N0U2 210 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 KCNG3Q8TAE7 436 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 SLC2A14Q8TDB8 520 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 RDH5Q92781 318 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 FCRL1Q96LA6 429 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 RASL11BQ9BPW5 248 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 FAIM2Q9BWQ8 316 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 GPR61Q9BZJ8 451 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 ROGDIQ9GZN7 287 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 NXF3Q9H4D5 531 aaKnown RBP1.4□□□□□ -2.19
VPS13A-206ENST00000376646 TM9SF3Q9HD45 589 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 MYOZ2Q9NPC6 264 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 ADAP2Q9NPF8 381 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 SLC2A8Q9NY64 477 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 SPATA7Q9P0W8 599 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 NEUROG3Q9Y4Z2 214 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 CSDC2Q9Y534 153 aaKnown RBP1.4□□□□□ -2.19
VPS13A-206ENST00000376646 SLC25A15Q9Y619 301 aa1.4□□□□□ -2.19
VPS13A-206ENST00000376646 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP1.39□□□□□ -2.19
VPS13A-206ENST00000376646 HMMRO75330 724 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 ERLIN1O75477 346 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 NDUFB10O96000 172 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 MOSP00540 346 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 SERPIND1P05546 499 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 MCF2P10911 925 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 ICAM2P13598 275 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 CHMLP26374 656 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 PRDX3P30048 256 aaKnown RBP1.39□□□□□ -2.19
VPS13A-206ENST00000376646 FDFT1P37268 417 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 CTRLP40313 264 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 NUP107P57740 925 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 PLP1P60201 277 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 BEX3Q00994 111 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 PSG7Q13046 419 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 DAZ2Q13117 558 aaKnown RBP1.39□□□□□ -2.19
VPS13A-206ENST00000376646 CASC10Q5T4H9 136 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 CTRB2Q6GPI1 263 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 CNIH2Q6PI25 160 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 ASCL5Q7RTU5 278 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 SUMF2Q8NBJ7 301 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 RNF138Q8WVD3 245 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 ACOT11Q8WXI4 607 aaPredicted RBP1.39□□□□□ -2.19
VPS13A-206ENST00000376646 NDRG1Q92597 394 aaKnown RBP1.39□□□□□ -2.19
VPS13A-206ENST00000376646 RASD2Q96D21 266 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 MED8Q96G25 268 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 HSFY1Q96LI6 401 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 OR8B4Q96RC9 309 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 MBOAT4Q96T53 435 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 SORT1Q99523 831 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 CCDC77Q9BR77 488 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 TMEM246Q9BRR3 403 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 TMEM59Q9BXS4 323 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 IL26Q9NPH9 171 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 DAZ3Q9NR90 486 aaKnown RBP1.39□□□□□ -2.19
VPS13A-206ENST00000376646 DCAF16Q9NXF7 216 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 CALYQ9NYX4 217 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 CTNNA3Q9UI47 895 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 CDHR2Q9BYE9 1310 aa1.39□□□□□ -2.19
VPS13A-206ENST00000376646 HEATR9A2RTY3 570 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 CTAGE15A4D2H0 777 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 CCDC182A6NF36 153 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 GJE1A6NN92 205 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 C12orf77C9JDV5 145 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 PPP1R2P9O14990 202 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 ERLIN2O94905 339 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 TNNI1P19237 187 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 MDKP21741 143 aaPredicted RBP1.38□□□□□ -2.19
VPS13A-206ENST00000376646 HSD17B2P37059 387 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 CRYBB2P43320 205 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 ERVK-25P63136 954 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 KCNJ2P63252 427 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 IRX3P78415 501 aaPredicted RBP1.38□□□□□ -2.19
VPS13A-206ENST00000376646 REG3AQ06141 175 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 UNC119Q13432 240 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 CYTH1Q15438 398 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 TGFBIQ15582 683 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 LCN12Q6JVE5 192 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 NIPA1Q7RTP0 329 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 CTAGE6Q86UF2 777 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 ENTHD1Q8IYW4 607 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 PUSL1Q8N0Z8 303 aaKnown RBP1.38□□□□□ -2.19
VPS13A-206ENST00000376646 OR2G2Q8NGZ5 317 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 FGF14Q92915 247 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 SMARCD2Q92925 531 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 MYDGFQ969H8 173 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 PLIN2Q99541 437 aa1.38□□□□□ -2.19
VPS13A-206ENST00000376646 NRIP2Q9BQI9 281 aa1.38□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms