RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 TP63Q9H3D4 680 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-202ENST00000375405 OR6C3Q9NZP0 311 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 CKAP5Q14008 2032 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF264O43296 627 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 TCF21O43680 179 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 SRPX2O60687 465 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-202ENST00000375405 GPR32O75388 356 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 IGHV3-9P01782 118 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 ALADP13716 330 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 EVI2BP34910 448 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 SMAGPQ0VAQ4 97 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 HNRNPA0Q13151 305 aaKnown RBP4.33□□□□□ -1.72
SCN1A-202ENST00000375405 GPR17Q13304 367 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 OR4D1Q15615 310 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 SSX1Q16384 188 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 IL17AQ16552 155 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 ACSM6Q6P461 480 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 PRSS55Q6UWB4 352 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-202ENST00000375405 PPP1R3BQ86XI6 285 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 GEMIN6Q8WXD5 167 aaKnown RBP4.33□□□□□ -1.72
SCN1A-202ENST00000375405 ACY3Q96HD9 319 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 NIPSNAP3BQ9BS92 247 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 CHST6Q9GZX3 395 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 DCSTAMPQ9H295 470 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 OR51J1Q9H342 316 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 SAR1AQ9NR31 198 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-202ENST00000375405 SNX10Q9Y5X0 201 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.33□□□□□ -1.728e-7■■■■□ 21.2
SCN1A-202ENST00000375405 MYH15Q9Y2K3 1946 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 TMEM238LA0A1B0GVL6 79 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 A6NJY4 79 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 OR5B21A6NL26 309 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF749O43361 778 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 SNX3O60493 162 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 GPIP06744 558 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 CCR7P32248 378 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 SLAMF1Q13291 335 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 GLYATL3Q5SZD4 288 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 HIST2H3AQ71DI3 136 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF547Q8IVP9 402 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 FAM26EQ8N5C1 309 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 TMEM178AQ8NBL3 297 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 GALMQ96C23 342 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 RASD2Q96D21 266 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 ZBTB45Q96K62 511 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-202ENST00000375405 NIPAL2Q9H841 368 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 S100A14Q9HCY8 104 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 WNT6Q9Y6F9 365 aa4.33□□□□□ -1.72
SCN1A-202ENST00000375405 TRAPPC13A5PLN9 417 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 GAGE10A6NGK3 116 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 H3BQ06 376 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 CXCR6O00574 342 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 ABHD16AO95870 558 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 FBXO45P0C2W1 286 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 CGB3P0DN86 165 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 CERS1P27544 350 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 GPR143P51810 404 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 CTXN1P60606 82 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 JAG1P78504 1218 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 GAB1Q13480 694 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 GPR50Q13585 617 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 DUSP6Q16828 381 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 TMEM107Q6UX40 140 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF551Q7Z340 670 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 GLB1L2Q8IW92 636 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 GLIS3Q8NEA6 775 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 OR6T1Q8NGN1 323 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 OR5AR1Q8NGP9 310 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 OR1N1Q8NGS0 311 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 OR13F1Q8NGS4 319 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 SPOCK2Q92563 424 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 TCEAL7Q9BRU2 100 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 WDR55Q9H6Y2 383 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 CD93Q9NPY3 652 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 CGGBP1Q9UFW8 167 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 SCML1Q9UN30 329 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 RALGAPA1Q6GYQ0 2036 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 CNTNAP1P78357 1384 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 LRRC7Q96NW7 1537 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 MYH7BA7E2Y1 1941 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 C5orf60A6NFR6 353 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 HIDE1A8MVS5 230 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 CCL22O00626 93 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 DEGS1O15121 323 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 BPGMP07738 259 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 FTH1P19P0C7X4 201 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 RNH1P13489 461 aaKnown RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 CD72P21854 359 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 SGSHP51688 502 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 HERPUD1Q15011 391 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF77Q15935 545 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 MEIG1Q5JSS6 88 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 PRAMEF6Q5VXH4 476 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 FAM109BQ6ICB4 259 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 KIAA0930Q6ICG6 404 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 FAHD2BQ6P2I3 314 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-202ENST00000375405 CLEC17AQ6ZS10 378 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 ARHGEF39Q8N4T4 335 aa4.32□□□□□ -1.72
SCN1A-202ENST00000375405 ZNF511Q8NB15 262 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms