RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 SLC6A15Q9H2J7 730 aa19.29■□□□□ 0.68
UPF3A-202ENST00000375299 CAPN10Q9HC96 672 aa19.29■□□□□ 0.68
UPF3A-202ENST00000375299 RXFP3Q9NSD7 469 aa19.29■□□□□ 0.68
UPF3A-202ENST00000375299 TRBV5-5A0A0J9YX44 114 aa19.29■□□□□ 0.68
UPF3A-202ENST00000375299 TMEM272A0A1B0GTI8 110 aa19.29■□□□□ 0.68
UPF3A-202ENST00000375299 DNASE2O00115 360 aaPredicted RBP19.29■□□□□ 0.68
UPF3A-202ENST00000375299 TACSTD2P09758 323 aa19.29■□□□□ 0.68
UPF3A-202ENST00000375299 ZNF10P21506 573 aaPredicted RBP19.29■□□□□ 0.68
UPF3A-202ENST00000375299 SORDQ00796 357 aa19.29■□□□□ 0.68
UPF3A-202ENST00000375299 GXYLT1Q4G148 440 aa19.29■□□□□ 0.68
UPF3A-202ENST00000375299 KRT77Q7Z794 578 aa19.29■□□□□ 0.68
UPF3A-202ENST00000375299 ZNF227Q86WZ6 799 aa19.29■□□□□ 0.68
UPF3A-202ENST00000375299 PXT1Q8NFP0 134 aa19.29■□□□□ 0.68
UPF3A-202ENST00000375299 Q96M85 177 aa19.29■□□□□ 0.68
UPF3A-202ENST00000375299 RSPH9Q9H1X1 276 aaPredicted RBP19.29■□□□□ 0.68
UPF3A-202ENST00000375299 LYRM4Q9HD34 91 aa19.29■□□□□ 0.68
UPF3A-202ENST00000375299 TMEM138Q9NPI0 162 aa19.29■□□□□ 0.68
UPF3A-202ENST00000375299 A0A1B0GW55 424 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 FAM171A2A8MVW0 826 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 PRAMEF2O60811 474 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 KDM4BO94953 1096 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 ANXA2P07355 339 aaKnown RBP19.28■□□□□ 0.68
UPF3A-202ENST00000375299 DUX4L2P0CJ85 424 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 DUX4L3P0CJ86 424 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 DUX4L4P0CJ87 422 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 DUX4L5P0CJ88 424 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 DUX4L6P0CJ89 424 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 DUX4L7P0CJ90 424 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 SCAND1P57086 179 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 ERVK-25P63136 954 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 ZNF169Q14929 603 aaPredicted RBP19.28■□□□□ 0.68
UPF3A-202ENST00000375299 FAM78AQ5JUQ0 283 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 C11orf88Q6PI97 169 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 ASB13Q8WXK3 278 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 ALG12Q9BV10 488 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 ZNF416Q9BWM5 594 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 THAP10Q9P2Z0 257 aaPredicted RBP19.28■□□□□ 0.68
UPF3A-202ENST00000375299 DUX4Q9UBX2 424 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 CTSVO60911 334 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 UPK3AO75631 287 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 CDC123O75794 336 aaPredicted RBP19.28■□□□□ 0.68
UPF3A-202ENST00000375299 GPR75O95800 540 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 GPR143P51810 404 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 CST6Q15828 149 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 ISXQ2M1V0 245 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 C17orf107Q6ZR85 190 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 ABHD13Q7L211 337 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 APMAPQ9HDC9 416 aa19.28■□□□□ 0.68
UPF3A-202ENST00000375299 RFPL4AA6NLU0 287 aa19.27■□□□□ 0.68
UPF3A-202ENST00000375299 RFPL4AL1F8VTS6 287 aa19.27■□□□□ 0.68
UPF3A-202ENST00000375299 RAB3AP20336 220 aa19.27■□□□□ 0.68
UPF3A-202ENST00000375299 LEG1Q6P5S2 330 aa19.27■□□□□ 0.68
UPF3A-202ENST00000375299 RELL2Q8NC24 303 aaPredicted RBP19.27■□□□□ 0.68
UPF3A-202ENST00000375299 RBM18Q96H35 190 aaKnown RBP19.27■□□□□ 0.68
UPF3A-202ENST00000375299 PCDHB16Q9NRJ7 776 aa19.27■□□□□ 0.68
UPF3A-202ENST00000375299 FRRS1LQ9P0K9 344 aa19.27■□□□□ 0.68
UPF3A-202ENST00000375299 STEAP1Q9UHE8 339 aa19.27■□□□□ 0.68
UPF3A-202ENST00000375299 MRM2Q9UI43 246 aaKnown RBP19.27■□□□□ 0.68
UPF3A-202ENST00000375299 MRPS2Q9Y399 296 aaKnown RBP19.27■□□□□ 0.68
UPF3A-202ENST00000375299 NUP210LQ5VU65 1888 aa19.27■□□□□ 0.67
UPF3A-202ENST00000375299 TMEM72A0PK05 275 aa19.27■□□□□ 0.67
UPF3A-202ENST00000375299 MAS1P04201 325 aa19.27■□□□□ 0.67
UPF3A-202ENST00000375299 UBBP0CG47 229 aa19.27■□□□□ 0.67
UPF3A-202ENST00000375299 UBCP0CG48 685 aaKnown RBP19.27■□□□□ 0.67
UPF3A-202ENST00000375299 AKAIN1P0CW23 69 aa19.27■□□□□ 0.67
UPF3A-202ENST00000375299 CSRP1P21291 193 aaKnown RBP19.27■□□□□ 0.67
UPF3A-202ENST00000375299 RPS27AP62979 156 aaKnown RBP19.27■□□□□ 0.67
UPF3A-202ENST00000375299 UBA52P62987 128 aaKnown RBP19.27■□□□□ 0.67
UPF3A-202ENST00000375299 HTRA3P83110 453 aa19.27■□□□□ 0.67
UPF3A-202ENST00000375299 LIPNQ5VXI9 398 aa19.27■□□□□ 0.67
UPF3A-202ENST00000375299 SLC16A9Q7RTY1 509 aa19.27■□□□□ 0.67
UPF3A-202ENST00000375299 ZNF550Q7Z398 422 aa19.27■□□□□ 0.67
UPF3A-202ENST00000375299 MCATQ8IVS2 390 aaKnown RBP19.27■□□□□ 0.67
UPF3A-202ENST00000375299 C12orf76Q8N812 135 aaPredicted RBP19.27■□□□□ 0.67
UPF3A-202ENST00000375299 ZNF511Q8NB15 262 aa19.27■□□□□ 0.67
UPF3A-202ENST00000375299 CLRN3Q8NCR9 226 aa19.27■□□□□ 0.67
UPF3A-202ENST00000375299 OR51S1Q8NGJ8 323 aa19.27■□□□□ 0.67
UPF3A-202ENST00000375299 LMAN2LQ9H0V9 348 aa19.27■□□□□ 0.67
UPF3A-202ENST00000375299 KLHDC2Q9Y2U9 406 aa19.27■□□□□ 0.67
UPF3A-202ENST00000375299 ZNF337Q9Y3M9 751 aa19.27■□□□□ 0.67
UPF3A-202ENST00000375299 SPACA6W5XKT8 324 aa19.27■□□□□ 0.67
UPF3A-202ENST00000375299 A0A1W2PP55 124 aa19.26■□□□□ 0.67
UPF3A-202ENST00000375299 GGT3PA6NGU5 568 aa19.26■□□□□ 0.67
UPF3A-202ENST00000375299 GTF2F2P13984 249 aa19.26■□□□□ 0.67
UPF3A-202ENST00000375299 ANKRD16Q6P6B7 361 aa19.26■□□□□ 0.67
UPF3A-202ENST00000375299 PRSS41Q7RTY9 318 aa19.26■□□□□ 0.67
UPF3A-202ENST00000375299 OR52R1Q8NGF1 315 aa19.26■□□□□ 0.67
UPF3A-202ENST00000375299 CCDC74AQ96AQ1 378 aa19.26■□□□□ 0.67
UPF3A-202ENST00000375299 CTHRC1Q96CG8 243 aa19.26■□□□□ 0.67
UPF3A-202ENST00000375299 NPAS1Q99742 590 aa19.26■□□□□ 0.67
UPF3A-202ENST00000375299 ST6GALNAC1Q9NSC7 600 aaPredicted RBP19.26■□□□□ 0.67
UPF3A-202ENST00000375299 TRAV8-7A0A075B6U6 113 aa19.26■□□□□ 0.67
UPF3A-202ENST00000375299 H3BUI4 141 aa19.26■□□□□ 0.67
UPF3A-202ENST00000375299 CBX7O95931 251 aa19.26■□□□□ 0.67
UPF3A-202ENST00000375299 MST1P26927 711 aa19.26■□□□□ 0.67
UPF3A-202ENST00000375299 CSF2RBP32927 897 aa19.26■□□□□ 0.67
UPF3A-202ENST00000375299 GUCA2AQ02747 115 aa19.26■□□□□ 0.67
UPF3A-202ENST00000375299 FAM53BQ14153 422 aa19.26■□□□□ 0.67
UPF3A-202ENST00000375299 C4orf46Q504U0 113 aa19.26■□□□□ 0.67
UPF3A-202ENST00000375299 CAMKVQ8NCB2 501 aa19.26■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms