RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 ARMC7Q9H6L4 198 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 RNF167Q9H6Y7 350 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 EGLN3Q9H6Z9 239 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 SYNDIG1Q9H7V2 258 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 SLC28A3Q9HAS3 691 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 IL21RQ9HBE5 538 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 EXOSC4Q9NPD3 245 aaKnown RBP4.36□□□□□ -1.71
USP48-202ENST00000374730 EQTNQ9NQ60 294 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 POLE3Q9NRF9 147 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 ABCB10Q9NRK6 738 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 CHCHD3Q9NX63 227 aaKnown RBP4.36□□□□□ -1.71
USP48-202ENST00000374730 IL20Q9NYY1 176 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 SSR3Q9UNL2 185 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 EXOGQ9Y2C4 368 aaKnown RBP4.36□□□□□ -1.71
USP48-202ENST00000374730 WDR45Q9Y484 360 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 PIAS3Q9Y6X2 628 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 TDRD6O60522 2096 aaKnown RBP4.36□□□□□ -1.71
USP48-202ENST00000374730 UNC80Q8N2C7 3258 aa4.36□□□□□ -1.71
USP48-202ENST00000374730 CACNA1AO00555 2505 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 XIRP2A4UGR9 3374 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 NUP210LQ5VU65 1888 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 THADAQ6YHU6 1953 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 IGLV5-39A0A0G2JS06 123 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 TRDV1A0A1B0GX56 115 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 TRAPPC13A5PLN9 417 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 PRAMEF26H0Y7S4 382 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 H0YGG7 62 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 SCAMP1O15126 338 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 AQP9O43315 295 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 CHST10O43529 356 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 FCMRO60667 390 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 GALR3O60755 368 aaPredicted RBP4.35□□□□□ -1.71
USP48-202ENST00000374730 STX11O75558 287 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 NKX2-2O95096 273 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 LYPD3O95274 346 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 SEMA4FO95754 770 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 GPR75O95800 540 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 TNFP01375 233 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 THY1P04216 161 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 FGF2P09038 288 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 TSPAN19P0C672 248 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 LIMS3P0CW19 117 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 LIMS4P0CW20 117 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 GNSP15586 552 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 ST6GAL1P15907 406 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 GABRG2P18507 467 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 POLR2CP19387 275 aaPredicted RBP4.35□□□□□ -1.71
USP48-202ENST00000374730 GALP22466 123 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 HTR1FP30939 366 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 FGF9P31371 208 aaPredicted RBP4.35□□□□□ -1.71
USP48-202ENST00000374730 GABRA5P31644 462 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 ACSL1P33121 698 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 ETV5P41161 510 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 SLC1A3P43003 542 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 SOX2P48431 317 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 SLC9A3P48764 834 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 ETV1P50549 477 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 RORCP51449 518 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 TPMTP51580 245 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 CDH11P55287 796 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 CTBP2P56545 445 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 RAB38P57729 211 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 PSPHP78330 225 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 BDH1Q02338 343 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 RUNX1T1Q06455 604 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 ZSWIM7Q19AV6 140 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 MIDNQ504T8 468 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 DCST2Q5T1A1 773 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 ARMC4Q5T2S8 1044 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 LIPKQ5VXJ0 399 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 NXNL2Q5VZ03 156 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 RPL13AP3Q6NVV1 102 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 CD200R1LQ6Q8B3 271 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 PAQR6Q6TCH4 344 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 QSOX2Q6ZRP7 698 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 RRM2BQ7LG56 351 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 HMGN2P46Q86SG4 172 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 RANBP3LQ86VV4 465 aaPredicted RBP4.35□□□□□ -1.71
USP48-202ENST00000374730 OOSP2Q86WS3 158 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 GID4Q8IVV7 300 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 NKAIN4Q8IVV8 208 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 NRMQ8IXM6 262 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 CA13Q8N1Q1 262 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 SLC43A2Q8N370 569 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 CLIP4Q8N3C7 705 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 COX18Q8N8Q8 333 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 POC5Q8NA72 575 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 ZBTB8BQ8NAP8 495 aaPredicted RBP4.35□□□□□ -1.71
USP48-202ENST00000374730 FAM83FQ8NEG4 500 aaPredicted RBP4.35□□□□□ -1.71
USP48-202ENST00000374730 OR2T33Q8NG76 320 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 OR52N1Q8NH53 320 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 OR10G6Q8NH81 332 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 GLMPQ8WWB7 406 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 FAM3CQ92520 227 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 TM9SF4Q92544 642 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 UFD1Q92890 307 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 SLC35B4Q969S0 331 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 RERGQ96A58 199 aaPredicted RBP4.35□□□□□ -1.71
USP48-202ENST00000374730 SLC25A46Q96AG3 418 aa4.35□□□□□ -1.71
USP48-202ENST00000374730 KIAA1143Q96AT1 154 aaPredicted RBP4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms