RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 FAM174AQ8TBP5 190 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 WFDC5Q8TCV5 224 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 HDAC8Q9BY41 377 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 GALNT9Q9HCQ5 603 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 PLCXD1Q9NUJ7 323 aa10.57□□□□□ -0.72
PTPRF-203ENST00000372407 APC2O95996 2303 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 ZNF195O14628 629 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 SULT1B1O43704 296 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 CTNSO60931 367 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 PTBP1P26599 531 aaKnown RBP eCLIP10.56□□□□□ -0.724e-7■■■■□ 23.8
PTPRF-203ENST00000372407 MTCP1P56278 107 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 ALKBH1Q13686 389 aaKnown RBP10.56□□□□□ -0.72
PTPRF-203ENST00000372407 SYT14P1Q58G82 188 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 KIAA0907Q7Z7F0 614 aaPredicted RBP10.56□□□□□ -0.72
PTPRF-203ENST00000372407 PLPP6Q8IY26 295 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 FAM26EQ8N5C1 309 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 OR4D6Q8NGJ1 314 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 SLC25A21Q9BQT8 299 aaPredicted RBP10.56□□□□□ -0.72
PTPRF-203ENST00000372407 ACER3Q9NUN7 267 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 A8MXE2 369 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 GFYI3L273 518 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 LCMT2O60294 686 aaKnown RBP10.56□□□□□ -0.72
PTPRF-203ENST00000372407 PRKRAO75569 313 aaKnown RBP10.56□□□□□ -0.72
PTPRF-203ENST00000372407 WDPCPO95876 746 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 MYOGP15173 224 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 HMGA1P17096 107 aaKnown RBP10.56□□□□□ -0.72
PTPRF-203ENST00000372407 GDF1P27539 372 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 IL2RGP31785 369 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 ERVFC1P60507 584 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 C17orf67Q0P5P2 114 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 SF3B4Q15427 424 aaKnown RBP eCLIP10.56□□□□□ -0.728e-8■■■□□ 14.9
PTPRF-203ENST00000372407 MEP1BQ16820 701 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 CREB3L2Q70SY1 520 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 EID2Q8N6I1 236 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 NANOGP1Q8N7R0 232 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 OR51D1Q8NGF3 324 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 CPT1CQ8TCG5 803 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 SLAMF9Q96A28 289 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 TCEAL7Q9BRU2 100 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 PRR14Q9BWN1 585 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 CEP290O15078 2479 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 A0A1W2PPV4 95 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 MED6O75586 246 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 PIPP12273 146 aaPredicted RBP10.56□□□□□ -0.72
PTPRF-203ENST00000372407 CHATP28329 748 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 TRHRP34981 398 aaPredicted RBP10.56□□□□□ -0.72
PTPRF-203ENST00000372407 MFAP5Q13361 173 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 HTR4Q13639 388 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 MSMO1Q15800 293 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 TANGO2Q6ICL3 276 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 FBXW12Q6X9E4 464 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 MOB3CQ70IA8 216 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 RABEPKQ7Z6M1 372 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 BBS1Q8NFJ9 593 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 RHBDD1Q8TEB9 315 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 PSMF1Q92530 271 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 CNTNAP3Q9BZ76 1288 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 DUSP22Q9NRW4 184 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 FAM212BQ9NTI7 297 aaPredicted RBP10.56□□□□□ -0.72
PTPRF-203ENST00000372407 D6RAR5 112 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 LGI1O95970 557 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 TRAPPC2P0DI81 140 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 TRAPPC2BP0DI82 140 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 HOXA9P31269 272 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 TAS2R30P59541 319 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 RPP30P78346 268 aaKnown RBP10.56□□□□□ -0.72
PTPRF-203ENST00000372407 TMEM52BQ4KMG9 183 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 ESPNLQ6ZVH7 1005 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 MED25Q71SY5 747 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 SLC16A14Q7RTX9 510 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 PRICKLE2Q7Z3G6 844 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 MRPL41Q8IXM3 137 aaKnown RBP10.56□□□□□ -0.72
PTPRF-203ENST00000372407 OR6M1Q8NGM8 313 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 MRPL38Q96DV4 380 aaKnown RBP10.56□□□□□ -0.72
PTPRF-203ENST00000372407 ARL5BQ96KC2 179 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 NUP205Q92621 2012 aa10.56□□□□□ -0.72
PTPRF-203ENST00000372407 A0A087WUU8 490 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.55□□□□□ -0.72
PTPRF-203ENST00000372407 FXYD1O00168 92 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 PAPLNO95428 1278 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 ITGB2P05107 769 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 SBK2P0C263 348 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 BLVRBP30043 206 aaPredicted RBP10.55□□□□□ -0.72
PTPRF-203ENST00000372407 RPL34P49207 117 aaKnown RBP10.55□□□□□ -0.72
PTPRF-203ENST00000372407 FGL2Q14314 439 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 CDKN3Q16667 212 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 LYSMD4Q5XG99 296 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 METRNLQ641Q3 311 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 OLIG3Q7RTU3 272 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 SLC51BQ86UW2 128 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 CMIPQ8IY22 773 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 CADM3Q8N126 398 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 OR10K1Q8NGX5 313 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 NUDT8Q8WV74 236 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 LINC01599Q8WXQ3 324 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 GIMAP5Q96F15 307 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 Q96M85 177 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 CHST8Q9H2A9 424 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 TMED7-TICAM2A0A0A6YYA0 188 aa10.55□□□□□ -0.72
PTPRF-203ENST00000372407 TRIM64BA6NI03 449 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms