RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 GRIP2Q9C0E4 1043 aa16.04■□□□□ 0.16
CLN3-202ENST00000355477 CRLF2Q9HC73 371 aa16.04■□□□□ 0.16
CLN3-202ENST00000355477 OBP2BQ9NPH6 170 aa16.04■□□□□ 0.16
CLN3-202ENST00000355477 CMTM6Q9NX76 183 aa16.04■□□□□ 0.16
CLN3-202ENST00000355477 NOX1Q9Y5S8 564 aa16.04■□□□□ 0.16
CLN3-202ENST00000355477 ATP23Q9Y6H3 246 aa16.04■□□□□ 0.16
CLN3-202ENST00000355477 FN1P02751 2386 aaKnown RBP16.04■□□□□ 0.16
CLN3-202ENST00000355477 ARPC4-TTLL3A0A0A6YYG9 625 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 IGHV1-18A0A0C4DH31 117 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 SLC35F4A4IF30 521 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 FAM220BPB1ANY3 271 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 M0R3G1 203 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 KPNA4O00629 521 aaPredicted RBP16.03■□□□□ 0.16
CLN3-202ENST00000355477 CH25HO95992 272 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 MT-ATP6P00846 226 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 AHCYP23526 432 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 KDELR2P33947 212 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 OR1E2P47887 323 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 CEACAM16Q2WEN9 425 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 CYBRD1Q53TN4 286 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 AGAP6Q5VW22 663 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 C11orf71Q6IPW1 123 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 PXKQ7Z7A4 578 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 C20orf196Q8IYI0 205 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 DEPDC4Q8N2C3 294 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 PIK3C3Q8NEB9 887 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 ANKK1Q8NFD2 765 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 OR2T12Q8NG77 320 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 OR5J2Q8NH18 312 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 MAGEE2Q8TD90 523 aaPredicted RBP16.03■□□□□ 0.16
CLN3-202ENST00000355477 MPP4Q96JB8 637 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 ALG2Q9H553 416 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 FAIMQ9NVQ4 179 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 TAS2R5Q9NYW4 299 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 GDF2Q9UK05 429 aaPredicted RBP16.03■□□□□ 0.16
CLN3-202ENST00000355477 BAG5Q9UL15 447 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 MOKQ9UQ07 419 aa16.03■□□□□ 0.16
CLN3-202ENST00000355477 ZNF503-AS2A6NEH8 195 aa16.02■□□□□ 0.16
CLN3-202ENST00000355477 C11orf98E9PRG8 122 aa16.02■□□□□ 0.16
CLN3-202ENST00000355477 ATP6V1G2-DDX39BF2Z307 99 aa16.02■□□□□ 0.16
CLN3-202ENST00000355477 AKAP8O43823 692 aaKnown RBP16.02■□□□□ 0.16
CLN3-202ENST00000355477 CCDC22O60826 627 aa16.02■□□□□ 0.16
CLN3-202ENST00000355477 SERPINI2O75830 405 aa16.02■□□□□ 0.16
CLN3-202ENST00000355477 LY6G6DO95868 133 aa16.02■□□□□ 0.16
CLN3-202ENST00000355477 IGHV4-39P01824 125 aa16.02■□□□□ 0.16
CLN3-202ENST00000355477 ADORA3P0DMS8 318 aa16.02■□□□□ 0.16
CLN3-202ENST00000355477 FABP6P51161 128 aa16.02■□□□□ 0.16
CLN3-202ENST00000355477 SEC24CP53992 1094 aa16.02■□□□□ 0.16
CLN3-202ENST00000355477 SH3BGRP55822 239 aaPredicted RBP16.02■□□□□ 0.16
CLN3-202ENST00000355477 UBE2NP61088 152 aaKnown RBP16.02■□□□□ 0.16
CLN3-202ENST00000355477 PIN1Q13526 163 aaPredicted RBP16.02■□□□□ 0.16
CLN3-202ENST00000355477 CAMK2DQ13557 499 aa16.02■□□□□ 0.16
CLN3-202ENST00000355477 CLEC9AQ6UXN8 241 aa16.02■□□□□ 0.16
CLN3-202ENST00000355477 SLC15A3Q8IY34 581 aa16.02■□□□□ 0.16
CLN3-202ENST00000355477 MICU2Q8IYU8 434 aa16.02■□□□□ 0.16
CLN3-202ENST00000355477 MUC15Q8N387 334 aa16.02■□□□□ 0.16
CLN3-202ENST00000355477 SLC38A2Q96QD8 506 aa16.02■□□□□ 0.16
CLN3-202ENST00000355477 ELAC2Q9BQ52 826 aaKnown RBP16.02■□□□□ 0.16
CLN3-202ENST00000355477 FKRPQ9H9S5 495 aa16.02■□□□□ 0.16
CLN3-202ENST00000355477 MEPEQ9NQ76 525 aaPredicted RBP16.02■□□□□ 0.16
CLN3-202ENST00000355477 ELOVL7A1L3X0 281 aa16.01■□□□□ 0.15
CLN3-202ENST00000355477 SEC14L2O76054 403 aa16.01■□□□□ 0.15
CLN3-202ENST00000355477 HOXB1P14653 301 aaPredicted RBP16.01■□□□□ 0.15
CLN3-202ENST00000355477 ACVR1BP36896 505 aa16.01■□□□□ 0.15
CLN3-202ENST00000355477 TNK1Q13470 666 aa16.01■□□□□ 0.15
CLN3-202ENST00000355477 CLEC12BQ2HXU8 276 aa16.01■□□□□ 0.15
CLN3-202ENST00000355477 LRRC23Q53EV4 343 aaPredicted RBP16.01■□□□□ 0.15
CLN3-202ENST00000355477 DEF8Q6ZN54 512 aa16.01■□□□□ 0.15
CLN3-202ENST00000355477 NKAIN4Q8IVV8 208 aa16.01■□□□□ 0.15
CLN3-202ENST00000355477 FBXL14Q8N1E6 418 aa16.01■□□□□ 0.15
CLN3-202ENST00000355477 LRR1Q96L50 414 aa16.01■□□□□ 0.15
CLN3-202ENST00000355477 SLC19A3Q9BZV2 496 aa16.01■□□□□ 0.15
CLN3-202ENST00000355477 SEC61A2Q9H9S3 476 aa16.01■□□□□ 0.15
CLN3-202ENST00000355477 NANSQ9NR45 359 aa16.01■□□□□ 0.15
CLN3-202ENST00000355477 CBLN4Q9NTU7 201 aa16.01■□□□□ 0.15
CLN3-202ENST00000355477 CRNNQ9UBG3 495 aaPredicted RBP16.01■□□□□ 0.15
CLN3-202ENST00000355477 RIMS3Q9UJD0 308 aa16.01■□□□□ 0.15
CLN3-202ENST00000355477 ABCA1O95477 2261 aa16■□□□□ 0.15
CLN3-202ENST00000355477 ZNF726A6NNF4 738 aa16■□□□□ 0.15
CLN3-202ENST00000355477 ZNF99A8MXY4 864 aaPredicted RBP16■□□□□ 0.15
CLN3-202ENST00000355477 OR6A2O95222 327 aa16■□□□□ 0.15
CLN3-202ENST00000355477 IFNA14P01570 189 aa16■□□□□ 0.15
CLN3-202ENST00000355477 ASAH2BP0C7U1 165 aa16■□□□□ 0.15
CLN3-202ENST00000355477 IFNGR1P15260 489 aa16■□□□□ 0.15
CLN3-202ENST00000355477 HOXB4P17483 251 aaPredicted RBP16■□□□□ 0.15
CLN3-202ENST00000355477 UGT2B15P54855 530 aa16■□□□□ 0.15
CLN3-202ENST00000355477 TAS2R41P59536 307 aa16■□□□□ 0.15
CLN3-202ENST00000355477 LIPEQ05469 1076 aa16■□□□□ 0.15
CLN3-202ENST00000355477 ZP4Q12836 540 aa16■□□□□ 0.15
CLN3-202ENST00000355477 ZNF544Q6NX49 715 aa16■□□□□ 0.15
CLN3-202ENST00000355477 C8orf82Q6P1X6 216 aaPredicted RBP16■□□□□ 0.15
CLN3-202ENST00000355477 SLC46A3Q7Z3Q1 461 aa16■□□□□ 0.15
CLN3-202ENST00000355477 SPATA21Q7Z572 469 aa16■□□□□ 0.15
CLN3-202ENST00000355477 MYPOPQ86VE0 399 aaPredicted RBP16■□□□□ 0.15
CLN3-202ENST00000355477 PFN4Q8NHR9 129 aa16■□□□□ 0.15
CLN3-202ENST00000355477 TMEM255BQ8WV15 326 aa16■□□□□ 0.15
CLN3-202ENST00000355477 TPD52L3Q96J77 140 aa16■□□□□ 0.15
CLN3-202ENST00000355477 CACNG6Q9BXT2 260 aa16■□□□□ 0.15
CLN3-202ENST00000355477 RTTNQ86VV8 2226 aa16■□□□□ 0.15
CLN3-202ENST00000355477 YLPM1P49750 1951 aaKnown RBP16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms