RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 MSTNO14793 375 aa19.62■□□□□ 0.73
SHMT1-203ENST00000354098 OR3A2P47893 321 aa19.62■□□□□ 0.73
SHMT1-203ENST00000354098 TSPAN31Q12999 210 aa19.62■□□□□ 0.73
SHMT1-203ENST00000354098 ANKRD34AQ69YU3 496 aa19.62■□□□□ 0.73
SHMT1-203ENST00000354098 NIPAL3Q6P499 406 aa19.62■□□□□ 0.73
SHMT1-203ENST00000354098 SLC35D2Q76EJ3 337 aa19.62■□□□□ 0.73
SHMT1-203ENST00000354098 ZNF100Q8IYN0 542 aa19.62■□□□□ 0.73
SHMT1-203ENST00000354098 APH1AQ96BI3 265 aa19.62■□□□□ 0.73
SHMT1-203ENST00000354098 NIPSNAP1Q9BPW8 284 aa19.62■□□□□ 0.73
SHMT1-203ENST00000354098 BDH2Q9BUT1 245 aa19.62■□□□□ 0.73
SHMT1-203ENST00000354098 INIPQ9NRY2 104 aa19.62■□□□□ 0.73
SHMT1-203ENST00000354098 IL20RAQ9UHF4 553 aa19.62■□□□□ 0.73
SHMT1-203ENST00000354098 LRRK2Q5S007 2527 aa19.61■□□□□ 0.73
SHMT1-203ENST00000354098 TFF3Q07654 80 aa19.61■□□□□ 0.73
SHMT1-203ENST00000354098 MELKQ14680 651 aa19.61■□□□□ 0.73
SHMT1-203ENST00000354098 SHQ1Q6PI26 577 aaKnown RBP19.61■□□□□ 0.73
SHMT1-203ENST00000354098 PARPBPQ9NWS1 579 aa19.61■□□□□ 0.73
SHMT1-203ENST00000354098 COL12A1Q99715 3063 aa19.61■□□□□ 0.73
SHMT1-203ENST00000354098 SLC35F4A4IF30 521 aa19.6■□□□□ 0.73
SHMT1-203ENST00000354098 MCIDASD6RGH6 385 aa19.6■□□□□ 0.73
SHMT1-203ENST00000354098 ZNF432O94892 652 aa19.6■□□□□ 0.73
SHMT1-203ENST00000354098 GRNP28799 593 aaKnown RBP19.6■□□□□ 0.73
SHMT1-203ENST00000354098 LGALS3BPQ08380 585 aa19.6■□□□□ 0.73
SHMT1-203ENST00000354098 ANKDD1AQ495B1 522 aa19.6■□□□□ 0.73
SHMT1-203ENST00000354098 THSD4Q6ZMP0 1018 aa19.6■□□□□ 0.73
SHMT1-203ENST00000354098 ZNF771Q7L3S4 317 aaPredicted RBP19.6■□□□□ 0.73
SHMT1-203ENST00000354098 OR5K1Q8NHB7 308 aa19.6■□□□□ 0.73
SHMT1-203ENST00000354098 CENPNQ96H22 339 aaPredicted RBP19.6■□□□□ 0.73
SHMT1-203ENST00000354098 DGCR6LQ9BY27 220 aa19.6■□□□□ 0.73
SHMT1-203ENST00000354098 MGAT4BQ9UQ53 548 aa19.6■□□□□ 0.73
SHMT1-203ENST00000354098 ASCL1P50553 236 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 ARHGDIAP52565 204 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 BIDP55957 195 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 CTXN1P60606 82 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 PRPS1P60891 318 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 ACKR1Q16570 336 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 TSPO2Q5TGU0 170 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 OR2M2Q96R28 347 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 RBM24Q9BX46 236 aaKnown RBP19.59■□□□□ 0.73
SHMT1-203ENST00000354098 A0A1W2PRG6 482 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 A1L4Q6 167 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 ARRDC5A6NEK1 342 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 CLDN1O95832 211 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 CARD17Q5XLA6 110 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 SMARCD3Q6STE5 483 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 STK32CQ86UX6 486 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 KIF18BQ86Y91 864 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 STMN2Q93045 179 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 NRBF2Q96F24 287 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 OR52D1Q9H346 318 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 EGLN3Q9H6Z9 239 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 SLC7A10Q9NS82 523 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 GALNT8Q9NY28 637 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 RCE1Q9Y256 329 aa19.59■□□□□ 0.73
SHMT1-203ENST00000354098 G3V2T6 193 aa19.58■□□□□ 0.72
SHMT1-203ENST00000354098 C19orf84I3L1E1 186 aa19.58■□□□□ 0.72
SHMT1-203ENST00000354098 NDUFB2O95178 105 aa19.58■□□□□ 0.72
SHMT1-203ENST00000354098 BCL10O95999 233 aa19.58■□□□□ 0.72
SHMT1-203ENST00000354098 IGFBP1P08833 259 aaPredicted RBP19.58■□□□□ 0.72
SHMT1-203ENST00000354098 ZNF23P17027 643 aa19.58■□□□□ 0.72
SHMT1-203ENST00000354098 RPL4P36578 427 aaKnown RBP19.58■□□□□ 0.72
SHMT1-203ENST00000354098 ERVK-25P63136 954 aa19.58■□□□□ 0.72
SHMT1-203ENST00000354098 FAM27E3Q08E93 113 aa19.58■□□□□ 0.72
SHMT1-203ENST00000354098 CAMK2DQ13557 499 aa19.58■□□□□ 0.72
SHMT1-203ENST00000354098 ZNF620Q6ZNG0 422 aa19.58■□□□□ 0.72
SHMT1-203ENST00000354098 TMEM123Q8N131 208 aa19.58■□□□□ 0.72
SHMT1-203ENST00000354098 UBE2J2Q8N2K1 259 aa19.58■□□□□ 0.72
SHMT1-203ENST00000354098 FANK1Q8TC84 345 aa19.58■□□□□ 0.72
SHMT1-203ENST00000354098 KATNB1Q9BVA0 655 aa19.58■□□□□ 0.72
SHMT1-203ENST00000354098 ADAM18Q9Y3Q7 739 aa19.58■□□□□ 0.72
SHMT1-203ENST00000354098 FREM1Q5H8C1 2179 aa19.58■□□□□ 0.72
SHMT1-203ENST00000354098 UPK3AO75631 287 aa19.57■□□□□ 0.72
SHMT1-203ENST00000354098 ADAP00813 363 aa19.57■□□□□ 0.72
SHMT1-203ENST00000354098 RUNX1T1Q06455 604 aa19.57■□□□□ 0.72
SHMT1-203ENST00000354098 TOP3AQ13472 1001 aaPredicted RBP19.57■□□□□ 0.72
SHMT1-203ENST00000354098 RFX4Q33E94 735 aa19.57■□□□□ 0.72
SHMT1-203ENST00000354098 FBXL19-AS1Q494R0 122 aa19.57■□□□□ 0.72
SHMT1-203ENST00000354098 FBXW9Q5XUX1 488 aa19.57■□□□□ 0.72
SHMT1-203ENST00000354098 BEND4Q6ZU67 534 aa19.57■□□□□ 0.72
SHMT1-203ENST00000354098 GABRG1Q8N1C3 465 aa19.57■□□□□ 0.72
SHMT1-203ENST00000354098 ICA1LQ8NDH6 482 aa19.57■□□□□ 0.72
SHMT1-203ENST00000354098 SAMD8Q96LT4 415 aa19.57■□□□□ 0.72
SHMT1-203ENST00000354098 SLCO5A1Q9H2Y9 848 aa19.57■□□□□ 0.72
SHMT1-203ENST00000354098 TXNIPQ9H3M7 391 aa19.57■□□□□ 0.72
SHMT1-203ENST00000354098 NPDC1Q9NQX5 325 aaPredicted RBP19.57■□□□□ 0.72
SHMT1-203ENST00000354098 ZNF346Q9UL40 294 aaKnown RBP19.57■□□□□ 0.72
SHMT1-203ENST00000354098 OAZ3Q9UMX2 235 aa19.57■□□□□ 0.72
SHMT1-203ENST00000354098 SPTBN1Q01082 2364 aaKnown RBP19.57■□□□□ 0.72
SHMT1-203ENST00000354098 SAC3D1A6NKF1 404 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 ZNF726A6NNF4 738 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 TP53P04637 393 aaPredicted RBP19.56■□□□□ 0.72
SHMT1-203ENST00000354098 FOXG1P55316 489 aaPredicted RBP19.56■□□□□ 0.72
SHMT1-203ENST00000354098 ELF3P78545 371 aaPredicted RBP19.56■□□□□ 0.72
SHMT1-203ENST00000354098 PHYHD1Q5SRE7 291 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 ARMC4Q5T2S8 1044 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 KLHL17Q6TDP4 642 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 Q6ZT83 130 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 RASSF6Q6ZTQ3 369 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 HIPK1Q86Z02 1210 aa19.56■□□□□ 0.72
SHMT1-203ENST00000354098 ZDHHC13Q8IUH4 622 aa19.56■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 249 ms