RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 PPM1DO15297 605 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 SRPX2O60687 465 aaPredicted RBP8.04□□□□□ -1.12
RTN3-202ENST00000339997 B3GALNT1O75752 331 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 CNMDO75829 334 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 UBL3O95164 117 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 CSF3P09919 207 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 RBMS1P29558 406 aaKnown RBP8.04□□□□□ -1.12
RTN3-202ENST00000339997 PRDX1Q06830 199 aaKnown RBP8.04□□□□□ -1.12
RTN3-202ENST00000339997 EXOSC2Q13868 293 aaKnown RBP8.04□□□□□ -1.12
RTN3-202ENST00000339997 CCINQ13939 588 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 AARDQ4LEZ3 155 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 PRAMEF20Q5VT98 475 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 SHEQ5VZ18 495 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 CREB3L2Q70SY1 520 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 SSX9Q7RTT3 188 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 ZNF680Q8NEM1 530 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 OR4C15Q8NGM1 316 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 MED30Q96HR3 178 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 LPAR4Q99677 370 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 C1QTNF6Q9BXI9 259 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 SLC2A11Q9BYW1 496 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 SLC6A17Q9H1V8 727 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 CSNK1G1Q9HCP0 422 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 ACOXLQ9NUZ1 547 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 ABRACLQ9P1F3 81 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 HRH3Q9Y5N1 445 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 KRBOX1C9JBD0 128 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 BHLHE40O14503 412 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 EFSO43281 561 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 UGDHO60701 494 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 ADH1BP00325 375 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 UBL4AP11441 157 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 CPT2P23786 658 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 THBS2P35442 1172 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 SERPINF1P36955 418 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 EPHA4P54764 986 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 FOXK1P85037 733 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 FABP5Q01469 135 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 CLVS2Q5SYC1 327 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 GKN2Q86XP6 184 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 ZNF100Q8IYN0 542 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 CBARPQ8N350 705 aaPredicted RBP8.04□□□□□ -1.12
RTN3-202ENST00000339997 CLDN22Q8N7P3 220 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 AVL9Q8NBF6 648 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 OR5D14Q8NGL3 314 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 OR14L1PQ8NHC6 308 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 LRIG1Q96JA1 1093 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 ZNF681Q96N22 645 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 AUNIPQ9H7T9 357 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 HSFX1Q9UBD0 423 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 FTSJ1Q9UET6 329 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 FBXO7Q9Y3I1 522 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 A0A087WV62 115 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 A0A087WZY1 265 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 PIGBOS1A0A0B4J2F0 54 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 A0A1B0GWA3 101 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 OR6C76A6NM76 312 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 SDCBPO00560 298 aaPredicted RBP8.04□□□□□ -1.12
RTN3-202ENST00000339997 MRPS14O60783 128 aaKnown RBP8.04□□□□□ -1.12
RTN3-202ENST00000339997 IFNA1P01562 189 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 ACHEP22303 614 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 PFN3P60673 137 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 SOHLH1Q5JUK2 328 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 SLC22A25Q6T423 547 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 ZNF705AQ6ZN79 300 aaPredicted RBP8.04□□□□□ -1.12
RTN3-202ENST00000339997 TMEM200AQ86VY9 491 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 FRMD1Q8N878 549 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 MYEOVQ96EZ4 313 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 DTD2Q96FN9 168 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 ZDHHC12Q96GR4 267 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 EMC6Q9BV81 110 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 KLF16Q9BXK1 252 aaPredicted RBP8.04□□□□□ -1.12
RTN3-202ENST00000339997 DUSP21Q9H596 190 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 HINT3Q9NQE9 182 aaKnown RBP8.04□□□□□ -1.12
RTN3-202ENST00000339997 SEMA4GQ9NTN9 838 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 KLK11Q9UBX7 282 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 NHSQ6T4R5 1651 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 TTC3P53804 2025 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 H3BQ06 376 aaPredicted RBP8.04□□□□□ -1.12
RTN3-202ENST00000339997 SULT2B1O00204 365 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 ONECUT3O60422 494 aaPredicted RBP8.04□□□□□ -1.12
RTN3-202ENST00000339997 ZNF780AO75290 641 aaPredicted RBP8.04□□□□□ -1.12
RTN3-202ENST00000339997 LGI1O95970 557 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 NUDT1P36639 197 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 DDOSTP39656 456 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 IAH1Q2TAA2 248 aaPredicted RBP8.04□□□□□ -1.12
RTN3-202ENST00000339997 TRMT12Q53H54 448 aaKnown RBP8.04□□□□□ -1.12
RTN3-202ENST00000339997 ZNF385BQ569K4 471 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 Q6ZSR6 202 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 LRRC56Q8IYG6 542 aaPredicted RBP8.04□□□□□ -1.12
RTN3-202ENST00000339997 SLC39A13Q96H72 371 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 SLC41A2Q96JW4 573 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 FAM234AQ9H0X4 552 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 DHCR7Q9UBM7 475 aaKnown RBP8.04□□□□□ -1.12
RTN3-202ENST00000339997 RPH3ALQ9UNE2 315 aa8.04□□□□□ -1.12
RTN3-202ENST00000339997 MED19A0JLT2 244 aaPredicted RBP8.03□□□□□ -1.12
RTN3-202ENST00000339997 FAM221AA4D161 298 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 MBLAC1A4D2B0 266 aaPredicted RBP8.03□□□□□ -1.12
RTN3-202ENST00000339997 ZFP92A6NM28 416 aa8.03□□□□□ -1.12
RTN3-202ENST00000339997 HOXC11O43248 304 aaPredicted RBP8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms