RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 PAPOLBQ9NRJ5 636 aaKnown RBP19.68■□□□□ 0.74
SDC3-202ENST00000339394 MED29Q9NX70 200 aa19.68■□□□□ 0.74
SDC3-202ENST00000339394 ZNF629Q9UEG4 869 aaPredicted RBP19.68■□□□□ 0.74
SDC3-202ENST00000339394 RNF6Q9Y252 685 aa19.68■□□□□ 0.74
SDC3-202ENST00000339394 CDH10Q9Y6N8 788 aa19.68■□□□□ 0.74
SDC3-202ENST00000339394 A0A1W2PRG6 482 aa19.67■□□□□ 0.74
SDC3-202ENST00000339394 SOCS2O14508 198 aa19.67■□□□□ 0.74
SDC3-202ENST00000339394 EI24O14681 340 aa19.67■□□□□ 0.74
SDC3-202ENST00000339394 BMP5P22003 454 aa19.67■□□□□ 0.74
SDC3-202ENST00000339394 OPRM1P35372 400 aa19.67■□□□□ 0.74
SDC3-202ENST00000339394 CLDN17P56750 224 aa19.67■□□□□ 0.74
SDC3-202ENST00000339394 SLC34A1Q06495 639 aa19.67■□□□□ 0.74
SDC3-202ENST00000339394 ZBTB49Q6ZSB9 765 aa19.67■□□□□ 0.74
SDC3-202ENST00000339394 SLC35D2Q76EJ3 337 aa19.67■□□□□ 0.74
SDC3-202ENST00000339394 CLDN22Q8N7P3 220 aa19.67■□□□□ 0.74
SDC3-202ENST00000339394 DNAJC9Q8WXX5 260 aa19.67■□□□□ 0.74
SDC3-202ENST00000339394 TMEM45BQ96B21 275 aa19.67■□□□□ 0.74
SDC3-202ENST00000339394 GPX7Q96SL4 187 aaPredicted RBP19.67■□□□□ 0.74
SDC3-202ENST00000339394 SLC29A1Q99808 456 aa19.67■□□□□ 0.74
SDC3-202ENST00000339394 EMC6Q9BV81 110 aa19.67■□□□□ 0.74
SDC3-202ENST00000339394 KATNB1Q9BVA0 655 aa19.67■□□□□ 0.74
SDC3-202ENST00000339394 KRT84Q9NSB2 600 aa19.67■□□□□ 0.74
SDC3-202ENST00000339394 TMEFF2Q9UIK5 374 aaPredicted RBP19.67■□□□□ 0.74
SDC3-202ENST00000339394 POFUT2Q9Y2G5 429 aa19.67■□□□□ 0.74
SDC3-202ENST00000339394 J3QKU1 62 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 MITFO75030 526 aaPredicted RBP19.66■□□□□ 0.74
SDC3-202ENST00000339394 MRPL33O75394 65 aaKnown RBP19.66■□□□□ 0.74
SDC3-202ENST00000339394 IL18BPO95998 194 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 ALPLP05186 524 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 CD14P08571 375 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 OSMP13725 252 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 ACKR1Q16570 336 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 SLC36A3Q495N2 470 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 CLEC12AQ5QGZ9 265 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 RPL13AP3Q6NVV1 102 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 DPY19L2P2Q6ZN68 376 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 BTLAQ7Z6A9 289 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 LIX1LQ8IVB5 337 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 OR6K3Q8NGY3 331 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 MAGEE2Q8TD90 523 aaPredicted RBP19.66■□□□□ 0.74
SDC3-202ENST00000339394 NDEL1Q9GZM8 345 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 C12orf49Q9H741 205 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 NRIP3Q9NQ35 241 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 PARPBPQ9NWS1 579 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 ADAM18Q9Y3Q7 739 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 UBR5O95071 2799 aaPredicted RBP19.66■□□□□ 0.74
SDC3-202ENST00000339394 SLC35F4A4IF30 521 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 H3BN98 237 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 IGFBP5P24593 272 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 EDNRAP25101 427 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 ALDH3A2P51648 485 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 ERVK-25P63136 954 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 DAG1Q14118 895 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 LRRC36Q1X8D7 754 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 LPCAT4Q643R3 524 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 AAED1Q7RTV5 226 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 WDFY1Q8IWB7 410 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 PARP8Q8N3A8 854 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 OR8D4Q8NGM9 314 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 POLDIP3Q9BY77 421 aaKnown RBP19.66■□□□□ 0.74
SDC3-202ENST00000339394 TXNIPQ9H3M7 391 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 USE1Q9NZ43 259 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 COQ3Q9NZJ6 369 aa19.66■□□□□ 0.74
SDC3-202ENST00000339394 NPIPB13A6NJU9 1138 aa19.65■□□□□ 0.74
SDC3-202ENST00000339394 NPIPB4C9JG80 1138 aa19.65■□□□□ 0.74
SDC3-202ENST00000339394 CASQ2O14958 399 aaPredicted RBP19.65■□□□□ 0.74
SDC3-202ENST00000339394 ZNF432O94892 652 aa19.65■□□□□ 0.74
SDC3-202ENST00000339394 ATP6V1G2O95670 118 aa19.65■□□□□ 0.74
SDC3-202ENST00000339394 BCL10O95999 233 aa19.65■□□□□ 0.74
SDC3-202ENST00000339394 CGAP01215 116 aa19.65■□□□□ 0.74
SDC3-202ENST00000339394 PEX2P28328 305 aa19.65■□□□□ 0.74
SDC3-202ENST00000339394 SLC6A6P31641 620 aa19.65■□□□□ 0.74
SDC3-202ENST00000339394 SELENOPP49908 381 aa19.65■□□□□ 0.74
SDC3-202ENST00000339394 BIDP55957 195 aa19.65■□□□□ 0.74
SDC3-202ENST00000339394 MELKQ14680 651 aa19.65■□□□□ 0.74
SDC3-202ENST00000339394 ZC3HAV1Q7Z2W4 902 aaKnown RBP19.65■□□□□ 0.74
SDC3-202ENST00000339394 OR52L1Q8NGH7 329 aa19.65■□□□□ 0.74
SDC3-202ENST00000339394 TSPAN32Q96QS1 320 aa19.65■□□□□ 0.74
SDC3-202ENST00000339394 ZNF346Q9UL40 294 aaKnown RBP19.65■□□□□ 0.74
SDC3-202ENST00000339394 MYO18BQ8IUG5 2567 aa19.64■□□□□ 0.74
SDC3-202ENST00000339394 ZG16O60844 167 aa19.64■□□□□ 0.73
SDC3-202ENST00000339394 POU1F1P28069 291 aa19.64■□□□□ 0.73
SDC3-202ENST00000339394 DAP3P51398 398 aaKnown RBP19.64■□□□□ 0.73
SDC3-202ENST00000339394 SMSP52788 366 aa19.64■□□□□ 0.73
SDC3-202ENST00000339394 TOP3AQ13472 1001 aaPredicted RBP19.64■□□□□ 0.73
SDC3-202ENST00000339394 ARMC4Q5T2S8 1044 aa19.64■□□□□ 0.73
SDC3-202ENST00000339394 NIPAL3Q6P499 406 aa19.64■□□□□ 0.73
SDC3-202ENST00000339394 CASP12Q6UXS9 341 aa19.64■□□□□ 0.73
SDC3-202ENST00000339394 FAM122BQ7Z309 247 aa19.64■□□□□ 0.73
SDC3-202ENST00000339394 IFT27Q9BW83 186 aa19.64■□□□□ 0.73
SDC3-202ENST00000339394 PLSCR4Q9NRQ2 329 aa19.64■□□□□ 0.73
SDC3-202ENST00000339394 TBC1D23Q9NUY8 699 aa19.64■□□□□ 0.73
SDC3-202ENST00000339394 RCE1Q9Y256 329 aa19.64■□□□□ 0.73
SDC3-202ENST00000339394 IER3IP1Q9Y5U9 82 aa19.64■□□□□ 0.73
SDC3-202ENST00000339394 HIVEP3Q5T1R4 2406 aa19.63■□□□□ 0.73
SDC3-202ENST00000339394 MYO7BQ6PIF6 2116 aa19.63■□□□□ 0.73
SDC3-202ENST00000339394 ZNF726A6NNF4 738 aa19.63■□□□□ 0.73
SDC3-202ENST00000339394 DVL2O14641 736 aa19.63■□□□□ 0.73
SDC3-202ENST00000339394 IGHMP01871 453 aa19.63■□□□□ 0.73
SDC3-202ENST00000339394 CHRNB4P30926 498 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms