RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 NAA10P41227 235 aaPredicted RBP3.71□□□□□ -1.81
MCF2-201ENST00000338585 EIF1P41567 113 aaKnown RBP3.71□□□□□ -1.81
MCF2-201ENST00000338585 STARP49675 285 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 CCL11P51671 97 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 OR2B6P58173 313 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 B3GALT5-AS1P59052 145 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 TLE3Q04726 772 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 PUDPQ08623 228 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 SELENBP1Q13228 472 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 SPHARQ15513 63 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 SSX1Q16384 188 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 CTF1Q16619 201 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 TSTQ16762 297 aaKnown RBP3.71□□□□□ -1.81
MCF2-201ENST00000338585 TBC1D25Q3MII6 688 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 SOWAHCQ53LP3 525 aaPredicted RBP3.71□□□□□ -1.81
MCF2-201ENST00000338585 ARMCX4Q5H9R4 360 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 WIPI1Q5MNZ9 446 aaPredicted RBP3.71□□□□□ -1.81
MCF2-201ENST00000338585 C5orf46Q6UWT4 87 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 H1FNTQ75WM6 255 aaPredicted RBP3.71□□□□□ -1.81
MCF2-201ENST00000338585 ZNF367Q7RTV3 350 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 JAZF1Q86VZ6 243 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 SULF2Q8IWU5 870 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 GPALPP1Q8IXQ4 340 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 PM20D2Q8IYS1 436 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 ARIH2OSQ8N7S6 290 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 EXD3Q8N9H8 876 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 ZNF511Q8NB15 262 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 FAM83FQ8NEG4 500 aaPredicted RBP3.71□□□□□ -1.81
MCF2-201ENST00000338585 OR2M7Q8NG81 312 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 OR10H4Q8NGA5 316 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 OR6K6Q8NGW6 343 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 OR14L1PQ8NHC6 308 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 C9orf43Q8TAL5 461 aaPredicted RBP3.71□□□□□ -1.81
MCF2-201ENST00000338585 ZNF519Q8TB69 540 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 GATAD2BQ8WXI9 593 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 TM9SF4Q92544 642 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 WNT2BQ93097 391 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 NXPE2Q96DL1 559 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 TXNDC15Q96J42 360 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 FOXN4Q96NZ1 517 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 OPALINQ96PE5 141 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 MGLLQ99685 303 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 DOK1Q99704 481 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 TIMP4Q99727 224 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 POTEKPQ9BYX7 375 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 SYT4Q9H2B2 425 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 RERGLQ9H628 205 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 CCDC86Q9H6F5 360 aaKnown RBP3.71□□□□□ -1.81
MCF2-201ENST00000338585 ZNF552Q9H707 407 aaPredicted RBP3.71□□□□□ -1.81
MCF2-201ENST00000338585 ISG20L2Q9H9L3 353 aaKnown RBP3.71□□□□□ -1.81
MCF2-201ENST00000338585 ADGRL4Q9HBW9 690 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 SRA1Q9HD15 236 aaKnown RBP3.71□□□□□ -1.81
MCF2-201ENST00000338585 CHST11Q9NPF2 352 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 TIMMDC1Q9NPL8 285 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 MED29Q9NX70 200 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 ERVK13-1Q9NX77 482 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 ALKBH4Q9NXW9 302 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 B3GAT1Q9P2W7 334 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 ENPP5Q9UJA9 477 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 SLC6A5Q9Y345 797 aa3.71□□□□□ -1.81
MCF2-201ENST00000338585 LOC400499M0QZD8 3231 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 A0A087WZY1 265 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 IGHV3-15A0A0B4J1V0 119 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 OR5H15A6NDH6 313 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 SLC22A31A6NKX4 558 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 FAM166BA8MTA8 275 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 SELENOFO60613 162 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 TRAPPC6AO75865 159 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 SBK2P0C263 348 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 IFNGR1P15260 489 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 MYL12AP19105 171 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 GADD45AP24522 165 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 GDF1P27539 372 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 ADH6P28332 368 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 GTF2E2P29084 291 aaKnown RBP3.71□□□□□ -1.82
MCF2-201ENST00000338585 SRD5A2P31213 254 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 RGS6P49758 472 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 DIO1P49895 249 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 P2RY4P51582 365 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 TMBIM6P55061 237 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 CLDN20P56880 219 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 RPL27P61353 136 aaKnown RBP3.71□□□□□ -1.82
MCF2-201ENST00000338585 VBP1P61758 197 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 NCS1P62166 190 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 POU3F1Q03052 451 aaPredicted RBP3.71□□□□□ -1.82
MCF2-201ENST00000338585 CDC20Q12834 499 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 SPCS2Q15005 226 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 ZNF800Q2TB10 664 aaPredicted RBP eCLIP3.71□□□□□ -1.82
MCF2-201ENST00000338585 DEFB109BQ30KR1 87 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 ANKDD1AQ495B1 522 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 ARMC4Q5T2S8 1044 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 LINC01590Q5TEZ4 76 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 AGAP7PQ5VUJ5 663 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 SSX6Q7RTT6 188 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 GALNTL5Q7Z4T8 443 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 ZBTB46Q86UZ6 589 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 P2RY8Q86VZ1 359 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 ANKRD13BQ86YJ7 626 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 UBQLNLQ8IYU4 475 aa3.71□□□□□ -1.82
MCF2-201ENST00000338585 OR6V1Q8N148 313 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms