RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 TMED7Q9Y3B3 224 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 COL2A1P02458 1487 aaPredicted RBP11.69□□□□□ -0.54
SDC3-201ENST00000336798 NRG2O14511 850 aaPredicted RBP11.69□□□□□ -0.54
SDC3-201ENST00000336798 BPIFCQ8NFQ6 507 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 THOC3Q96J01 351 aaKnown RBP11.69□□□□□ -0.54
SDC3-201ENST00000336798 ZNF230Q9UIE0 474 aaPredicted RBP11.69□□□□□ -0.54
SDC3-201ENST00000336798 NXT1Q9UKK6 140 aaKnown RBP11.69□□□□□ -0.54
SDC3-201ENST00000336798 MYH8P13535 1937 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 MEIOCA2RUB1 952 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 A8MVM7 634 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 EMP3P54852 163 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 CAMK2BQ13554 666 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 ZNF813Q6ZN06 617 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 KHSRPQ92945 711 aaKnown RBP eCLIP11.69□□□□□ -0.54
SDC3-201ENST00000336798 FGGYQ96C11 551 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 ELP4Q96EB1 424 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 AMDHD1Q96NU7 426 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 RANGRFQ9HD47 186 aaPredicted RBP11.69□□□□□ -0.54
SDC3-201ENST00000336798 ZNF587BE7ETH6 402 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 SLC31A2O15432 143 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 CT45A6P0DMU7 189 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 CT45A5P0DMU8 189 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 CT45A7P0DMV0 189 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 CT45A8P0DMV1 189 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 CT45A9P0DMV2 189 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 ACP2P11117 423 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 ICAM2P13598 275 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 HLA-DOBP13765 273 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 PRPH2P23942 346 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 MLF1P58340 268 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 MFAP5Q13361 173 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 VEZF1Q14119 521 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 CT45A2Q5DJT8 189 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 CT45A1Q5HYN5 189 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 PARP16Q8N5Y8 322 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 CT45A3Q8NHU0 189 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 NANPQ8TBE9 248 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 ALG12Q9BV10 488 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 GON7Q9BXV9 100 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 MCOLN1Q9GZU1 580 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 METTL17Q9H7H0 456 aaPredicted RBP11.69□□□□□ -0.54
SDC3-201ENST00000336798 ZNF732B4DXR9 585 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 SMLR1H3BR10 107 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 OR8G2PQ6IF36 304 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 NLRP8Q86W28 1048 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 CMIPQ8IY22 773 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 TMEM255BQ8WV15 326 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 ASB17Q8WXJ9 295 aa11.69□□□□□ -0.54
SDC3-201ENST00000336798 PARP12Q9H0J9 701 aaKnown RBP11.69□□□□□ -0.54
SDC3-201ENST00000336798 BLACEA4D250 179 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 CDHR4A6H8M9 788 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 CACNG3O60359 315 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 PIPP12273 146 aaPredicted RBP11.68□□□□□ -0.54
SDC3-201ENST00000336798 EIF2DP41214 584 aaKnown RBP11.68□□□□□ -0.54
SDC3-201ENST00000336798 RAD52P43351 418 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 SPCS2Q15005 226 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 BCL7AQ4VC05 210 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 AVPI1Q5T686 147 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 ARFGAP1Q8N6T3 406 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 C2CD4CQ8TF44 421 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 CLMPQ9H6B4 373 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 OBP2AQ9NY56 170 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 LUZP4Q9P127 313 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 SLC22A23A1A5C7 686 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 FABP6P51161 128 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 PLAC9Q5JTB6 97 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 Q6ZTK2 550 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 ADGRG5Q8IZF4 528 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 ZADH2Q8N4Q0 377 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 EMG1Q92979 244 aaKnown RBP11.68□□□□□ -0.54
SDC3-201ENST00000336798 CCDC74AQ96AQ1 378 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 ANKRD60Q9BZ19 345 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 C1GALT1Q9NS00 363 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 PIGLQ9Y2B2 252 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 PARP4Q9UKK3 1724 aaKnown RBP11.68□□□□□ -0.54
SDC3-201ENST00000336798 MYH11P35749 1972 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 PDGFAP04085 211 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 FOLR1P15328 257 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 SEMA3BQ13214 749 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 OR6V1Q8N148 313 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 TSSK2Q96PF2 358 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 SLC39A9Q9NUM3 307 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 MYH6P13533 1939 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 DRGXA6NNA5 263 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 ZNF749O43361 778 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 OR8U8P0C7N1 319 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 HTR2CP28335 458 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 TNFSF8P32971 234 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 THBS3P49746 956 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 RRADP55042 308 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 TCEAL1Q15170 157 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 ALKBH6Q3KRA9 238 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 ZNF691Q5VV52 312 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 S100A7AQ86SG5 101 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 NAA40Q86UY6 237 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 LGALS14Q8TCE9 139 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 RASD2Q96D21 266 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 ZNF597Q96LX8 424 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 NTMT1Q9BV86 223 aa11.68□□□□□ -0.54
SDC3-201ENST00000336798 PITHD1Q9GZP4 211 aaPredicted RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms