RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 F13BP05160 661 aa6.28□□□□□ -1.4
SF3B1-201ENST00000335508 MC2RQ01718 297 aa6.28□□□□□ -1.4
SF3B1-201ENST00000335508 ACKR1Q16570 336 aa6.28□□□□□ -1.4
SF3B1-201ENST00000335508 SLC36A2Q495M3 483 aa6.28□□□□□ -1.4
SF3B1-201ENST00000335508 RNASE10Q5GAN6 216 aaKnown RBP6.28□□□□□ -1.4
SF3B1-201ENST00000335508 SPNS2Q8IVW8 549 aa6.28□□□□□ -1.4
SF3B1-201ENST00000335508 GALNT16Q8N428 558 aa6.28□□□□□ -1.4
SF3B1-201ENST00000335508 SDR9C7Q8NEX9 313 aa6.28□□□□□ -1.4
SF3B1-201ENST00000335508 OR13F1Q8NGS4 319 aa6.28□□□□□ -1.4
SF3B1-201ENST00000335508 OR5AK2Q8NH90 309 aa6.28□□□□□ -1.4
SF3B1-201ENST00000335508 HAVCR1Q96D42 359 aa6.28□□□□□ -1.4
SF3B1-201ENST00000335508 OR10A2Q9H208 303 aa6.28□□□□□ -1.4
SF3B1-201ENST00000335508 CDCP1Q9H5V8 836 aa6.28□□□□□ -1.4
SF3B1-201ENST00000335508 MMP25Q9NPA2 562 aa6.28□□□□□ -1.4
SF3B1-201ENST00000335508 RAD51DO75771 328 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 MRPL3P09001 348 aaKnown RBP6.27□□□□□ -1.41
SF3B1-201ENST00000335508 ZNF806P0C7X5 589 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 PTPN6P29350 595 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 SDHAP31040 664 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 ANKRD13BQ86YJ7 626 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 NAXDQ8IW45 347 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 SLC37A3Q8NCC5 494 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 OR6S1Q8NH40 331 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 ELP5Q8TE02 316 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 DHRS1Q96LJ7 313 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 ARHGDIGQ99819 225 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 HINT3Q9NQE9 182 aaKnown RBP6.27□□□□□ -1.41
SF3B1-201ENST00000335508 ZNF639Q9UID6 485 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 TCRBV5S2A0A599 114 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 TMEM212A6NML5 194 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 PRICKLE4Q2TBC4 344 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 STPG1Q5TH74 334 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 TMEM53Q6P2H8 277 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 PAQR6Q6TCH4 344 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 METAP1DQ6UB28 335 aaPredicted RBP6.27□□□□□ -1.41
SF3B1-201ENST00000335508 ZNF836Q6ZNA1 936 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 TIGD4Q8IY51 512 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 SYT14Q8NB59 555 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 UBASH3BQ8TF42 649 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 C10orf90Q96M02 699 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 QPCTLQ9NXS2 382 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 HIF3AQ9Y2N7 669 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 CKAP5Q14008 2032 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 RBBP6Q7Z6E9 1792 aaKnown RBP6.27□□□□□ -1.41
SF3B1-201ENST00000335508 TRAV27A0A087WT01 109 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 PRAMEF27A3QJZ7 478 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 A6NL46 340 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 KDM4EB2RXH2 506 aaPredicted RBP6.27□□□□□ -1.41
SF3B1-201ENST00000335508 WRBO00258 174 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 HSPA12AO43301 675 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 OR2J2O76002 312 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 GABARAPO95166 117 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 RAB40ALP0C0E4 278 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 GSTT2P0CG29 244 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 UGT2B10P36537 528 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 MAP2K3P46734 347 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 RAE1P78406 368 aaKnown RBP6.27□□□□□ -1.41
SF3B1-201ENST00000335508 SNTB2Q13425 540 aaKnown RBP6.27□□□□□ -1.41
SF3B1-201ENST00000335508 EIF5AL1Q6IS14 154 aaKnown RBP6.27□□□□□ -1.41
SF3B1-201ENST00000335508 KLHL17Q6TDP4 642 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 WDR88Q6ZMY6 472 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 MARCH3Q86UD3 253 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 MKXQ8IYA7 352 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 SIRT6Q8N6T7 355 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 OR11G2Q8NGC1 345 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 OR5D14Q8NGL3 314 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 RAB40AQ8WXH6 277 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 GGHQ92820 318 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 MOB1AQ9H8S9 216 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 WDR76Q9H967 626 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 SH2B3Q9UQQ2 575 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 PLXNA1Q9UIW2 1896 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 HRO43593 1189 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 SULT1C4O75897 302 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 CELA2BP08218 269 aaPredicted RBP6.27□□□□□ -1.41
SF3B1-201ENST00000335508 HOXB9P17482 250 aaPredicted RBP6.27□□□□□ -1.41
SF3B1-201ENST00000335508 ABCD3P28288 659 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 SLC46A3Q7Z3Q1 461 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 TMEM106AQ96A25 262 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 NIPSNAP1Q9BPW8 284 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 DDA1Q9BW61 102 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 CHMP1AQ9HD42 196 aaPredicted RBP6.27□□□□□ -1.41
SF3B1-201ENST00000335508 NOTOA8MTQ0 251 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 SSNA1O43805 119 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 PRKACBP22694 351 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 ALDH3B2P48448 385 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 ACSM3Q53FZ2 586 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 OR7E24Q6IFN5 339 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.27□□□□□ -1.41
SF3B1-201ENST00000335508 MRPL21Q7Z2W9 205 aaKnown RBP6.27□□□□□ -1.41
SF3B1-201ENST00000335508 ZBTB44Q8NCP5 570 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 CPNE4Q96A23 557 aaPredicted RBP6.27□□□□□ -1.41
SF3B1-201ENST00000335508 LIN37Q96GY3 246 aaPredicted RBP6.27□□□□□ -1.41
SF3B1-201ENST00000335508 NMNAT3Q96T66 252 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 TMED9Q9BVK6 235 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 SPACA1Q9HBV2 294 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 CES1P1Q9UKY3 287 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 TRAPPC4Q9Y296 219 aa6.27□□□□□ -1.41
SF3B1-201ENST00000335508 FITM1A5D6W6 292 aa6.26□□□□□ -1.41
SF3B1-201ENST00000335508 ASPDHA6ND91 283 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms