RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 DCKP27707 260 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 CDKN2AP42771 156 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 MAGEA5P43359 124 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 LHX2P50458 406 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 OR2B6P58173 313 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 PPIAP62937 165 aaKnown RBP13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 HSF1Q00613 529 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 PLGLB1Q02325 96 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 EMX1Q04741 257 aaPredicted RBP13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 PIGFQ07326 219 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 LGALS3BPQ08380 585 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 TOMM20Q15388 145 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 NADK2Q4G0N4 442 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 UBE2UQ5VVX9 321 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 Q6ZS92 163 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 HDDC2Q7Z4H3 204 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 JAZF1Q86VZ6 243 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 STX19Q8N4C7 294 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 ZADH2Q8N4Q0 377 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 TMEM99Q8N816 258 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 SDR9C7Q8NEX9 313 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 OR52I1Q8NGK6 324 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 OR2V1Q8NHB1 315 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 FAR1Q8WVX9 515 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 ASB10Q8WXI3 467 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 RNFT2Q96EX2 444 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 TMEM80Q96HE8 168 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 FAM192AQ9GZU8 254 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 ACOT13Q9NPJ3 140 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 H2AFY2Q9P0M6 372 aaPredicted RBP13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 KLHL13Q9P2N7 655 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 MOKQ9UQ07 419 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 CSAG2Q9Y5P2 127 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 ACACAQ13085 2346 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 ASPMQ8IZT6 3477 aa13.36□□□□□ -0.27
CCDC88C-202ENST00000334448 A0A087WV48 116 aa13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 PRSS37A4D1T9 235 aa13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 DPPA5A6NC42 116 aa13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 OR6C68A6NDL8 312 aa13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 CENPBD1B2RD01 187 aa13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 RAB36O95755 333 aa13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 FADS2O95864 444 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 IGHG3P01860 377 aa13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 STSP08842 583 aa13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 ZNF708P17019 499 aa13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 SPI1P17947 270 aa13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 C21orf33P30042 268 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 CLDN15P56746 228 aa13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 POU4F2Q12837 409 aa13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 INAQ16352 499 aa13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 SYT6Q5T7P8 510 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 LCN1P1Q5VSP4 162 aa13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 TRILQ7L0X0 811 aa13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 CYB561A3Q8NBI2 242 aa13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 FAM122AQ96E09 287 aa13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 ZHX1-C8orf76Q96EF9 292 aa13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 OXGR1Q96P68 337 aa13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 NMNAT3Q96T66 252 aa13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 TEAD3Q99594 435 aa13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 NAA11Q9BSU3 229 aaPredicted RBP13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 SF3B5Q9BWJ5 86 aaKnown RBP13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 INPP5EQ9NRR6 644 aa13.35□□□□□ -0.27
CCDC88C-202ENST00000334448 EML6Q6ZMW3 1958 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 FAM166BA8MTA8 275 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 ZNF814B7Z6K7 855 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 C11orf98E9PRG8 122 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 MKRN2OSH3BPM6 223 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 XKRYO14609 159 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 SEC14L2O76054 403 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 ADRA2AP08913 450 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 CELA3AP09093 270 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 AHCYP23526 432 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 CD97P48960 835 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 CENPAP49450 140 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 CLDN18P56856 261 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 CLDN20P56880 219 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 TMPRSS3P57727 454 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 ZNF169Q14929 603 aaPredicted RBP13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 SLC10A1Q14973 349 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 RNFT1Q5M7Z0 435 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 PDSS1Q5T2R2 415 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 LINC01590Q5TEZ4 76 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 EEF1A1P5Q5VTE0 462 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 ABLIM2Q6H8Q1 611 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 RPUSD3Q6P087 351 aaKnown RBP13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 LEG1Q6P5S2 330 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 SLC35D2Q76EJ3 337 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 ZBTB46Q86UZ6 589 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 POMGNT2Q8NAT1 580 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 OR13F1Q8NGS4 319 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 OR2T4Q8NH00 348 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 NEIL3Q8TAT5 605 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 ZPLD1Q8TCW7 415 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 SLC39A7Q92504 469 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 CRELD1Q96HD1 420 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 ALG12Q9BV10 488 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 RACGAP1Q9H0H5 632 aa13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 TSPAN10Q9H1Z9 355 aaPredicted RBP13.34□□□□□ -0.27
CCDC88C-202ENST00000334448 MED20Q9H944 212 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms