RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 SLC34A2O95436 690 aa9.39□□□□□ -0.91
CHD3-201ENST00000330494 CDK2P24941 298 aa9.39□□□□□ -0.91
CHD3-201ENST00000330494 TRIM23P36406 574 aa9.39□□□□□ -0.91
CHD3-201ENST00000330494 RAB5CP51148 216 aa9.39□□□□□ -0.91
CHD3-201ENST00000330494 GFERP55789 205 aa9.39□□□□□ -0.91
CHD3-201ENST00000330494 IL13RA1P78552 427 aa9.39□□□□□ -0.91
CHD3-201ENST00000330494 FOXK2Q01167 660 aa9.39□□□□□ -0.91
CHD3-201ENST00000330494 SLC35F3Q8IY50 421 aa9.39□□□□□ -0.91
CHD3-201ENST00000330494 ZFPM2Q8WW38 1151 aa9.39□□□□□ -0.91
CHD3-201ENST00000330494 ZNF681Q96N22 645 aa9.39□□□□□ -0.91
CHD3-201ENST00000330494 USB1Q9BQ65 265 aaKnown RBP9.39□□□□□ -0.91
CHD3-201ENST00000330494 PBDC1Q9BVG4 233 aa9.39□□□□□ -0.91
CHD3-201ENST00000330494 TGIF2Q9GZN2 237 aa9.39□□□□□ -0.91
CHD3-201ENST00000330494 EPHX3Q9H6B9 360 aa9.39□□□□□ -0.91
CHD3-201ENST00000330494 CTNSO60931 367 aa9.39□□□□□ -0.91
CHD3-201ENST00000330494 TUSC2O75896 110 aa9.39□□□□□ -0.91
CHD3-201ENST00000330494 SERPINE2P07093 398 aa9.39□□□□□ -0.91
CHD3-201ENST00000330494 RPA2P15927 270 aa9.39□□□□□ -0.91
CHD3-201ENST00000330494 OR13C9Q8NGT0 318 aa9.39□□□□□ -0.91
CHD3-201ENST00000330494 TSLPQ969D9 159 aa9.39□□□□□ -0.91
CHD3-201ENST00000330494 SORCS2Q96PQ0 1159 aa9.39□□□□□ -0.91
CHD3-201ENST00000330494 IL37Q9NZH6 218 aa9.39□□□□□ -0.91
CHD3-201ENST00000330494 UBR3Q6ZT12 1888 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 SHISA7A6NL88 538 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 POM121CA8CG34 1229 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 TMPRSS11DO60235 418 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 NKAIN1Q4KMZ8 207 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 ANKRD34AQ69YU3 496 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 PSMF1Q92530 271 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 GPATCH2Q9NW75 528 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 ENSAO43768 121 aaKnown RBP9.38□□□□□ -0.91
CHD3-201ENST00000330494 SLC2A10O95528 541 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 IGLV3-25P01717 112 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 GAAP10253 952 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 RIPPLY1Q0D2K3 151 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 MLLT11Q13015 90 aaPredicted RBP9.38□□□□□ -0.91
CHD3-201ENST00000330494 MKXQ8IYA7 352 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 OR5AS1Q8N127 324 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 GPR78Q96P69 363 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 FKRPQ9H9S5 495 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 RREB1Q92766 1687 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 TRAV36DV7A0A075B6V5 113 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 PRAMEF25A6NGN4 478 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 AIPO00170 330 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 SC5DO75845 299 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 AGTR1P30556 359 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 IKZF1Q13422 519 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 PRTGQ2VWP7 1150 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 SLC36A2Q495M3 483 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 UBE2NLQ5JXB2 153 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 ARL11Q969Q4 196 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 MIB2Q96AX9 1013 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 FGGYQ96C11 551 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 SIDT1Q9NXL6 827 aaKnown RBP9.38□□□□□ -0.91
CHD3-201ENST00000330494 MIA3Q5JRA6 1907 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 A0A1W2PQ09 198 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 TGM6O95932 706 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 GRPP07492 148 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 MAGEB1P43366 347 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 FER1L6-AS2Q96M78 137 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 RCE1Q9Y256 329 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 SFTPA1Q8IWL2 248 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 PIGTQ969N2 578 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 SLC35A4Q96G79 324 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 ARL5BQ96KC2 179 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 SULT4A1Q9BR01 284 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 SELENOIQ9C0D9 397 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 TCEAL2Q9H3H9 227 aaPredicted RBP9.38□□□□□ -0.91
CHD3-201ENST00000330494 OBP2AQ9NY56 170 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 CNOT2Q9NZN8 540 aaKnown RBP9.38□□□□□ -0.91
CHD3-201ENST00000330494 OR51B4Q9Y5P0 310 aa9.38□□□□□ -0.91
CHD3-201ENST00000330494 K7EPK0 472 aa9.37□□□□□ -0.91
CHD3-201ENST00000330494 PRAMEF4O60810 478 aa9.37□□□□□ -0.91
CHD3-201ENST00000330494 TGM4P49221 684 aa9.37□□□□□ -0.91
CHD3-201ENST00000330494 SOWAHCQ53LP3 525 aaPredicted RBP9.37□□□□□ -0.91
CHD3-201ENST00000330494 TMEM196Q5HYL7 178 aa9.37□□□□□ -0.91
CHD3-201ENST00000330494 TIGD3Q6B0B8 471 aa9.37□□□□□ -0.91
CHD3-201ENST00000330494 CCDC71Q8IV32 467 aaPredicted RBP9.37□□□□□ -0.91
CHD3-201ENST00000330494 FAM71E2Q8N5Q1 922 aa9.37□□□□□ -0.91
CHD3-201ENST00000330494 BRIX1Q8TDN6 353 aaKnown RBP9.37□□□□□ -0.91
CHD3-201ENST00000330494 FRZBQ92765 325 aa9.37□□□□□ -0.91
CHD3-201ENST00000330494 Q96M85 177 aa9.37□□□□□ -0.91
CHD3-201ENST00000330494 BCL7BQ9BQE9 202 aa9.37□□□□□ -0.91
CHD3-201ENST00000330494 FOCADQ5VW36 1801 aa9.37□□□□□ -0.91
CHD3-201ENST00000330494 ATAD5Q96QE3 1844 aa9.37□□□□□ -0.91
CHD3-201ENST00000330494 FGF17O60258 216 aa9.37□□□□□ -0.91
CHD3-201ENST00000330494 TPOP07202 933 aa9.37□□□□□ -0.91
CHD3-201ENST00000330494 CD63P08962 238 aa9.37□□□□□ -0.91
CHD3-201ENST00000330494 SLC1A3P43003 542 aa9.37□□□□□ -0.91
CHD3-201ENST00000330494 CX3CR1P49238 355 aa9.37□□□□□ -0.91
CHD3-201ENST00000330494 CYB561P49447 251 aa9.37□□□□□ -0.91
CHD3-201ENST00000330494 RBPJQ06330 500 aa9.37□□□□□ -0.91
CHD3-201ENST00000330494 CORO6Q6QEF8 472 aa9.37□□□□□ -0.91
CHD3-201ENST00000330494 LYPD4Q6UWN0 246 aa9.37□□□□□ -0.91
CHD3-201ENST00000330494 LANCL3Q6ZV70 420 aa9.37□□□□□ -0.91
CHD3-201ENST00000330494 TMEM102Q8N9M5 508 aaPredicted RBP9.37□□□□□ -0.91
CHD3-201ENST00000330494 OR14A2Q96R54 314 aa9.37□□□□□ -0.91
CHD3-201ENST00000330494 DCLRE1CQ96SD1 692 aaKnown RBP9.37□□□□□ -0.91
CHD3-201ENST00000330494 ZNF587Q96SQ5 575 aaPredicted RBP9.37□□□□□ -0.91
CHD3-201ENST00000330494 CMSS1Q9BQ75 279 aaKnown RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms