RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 A0A0A6YYC8 382 aaPredicted RBP10.65□□□□□ -0.7
VPS39-201ENST00000318006 I3L1I5 382 aaPredicted RBP10.65□□□□□ -0.7
VPS39-201ENST00000318006 UBL4AP11441 157 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 ZNF44P15621 663 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 RAB4AP20338 218 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 MBOAT2Q6ZWT7 520 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 ANKRD33Q7Z3H0 272 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 NAA40Q86UY6 237 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 RBMXL1Q96E39 390 aaKnown RBP10.65□□□□□ -0.7
VPS39-201ENST00000318006 LMF2Q9BU23 707 aaKnown RBP10.65□□□□□ -0.7
VPS39-201ENST00000318006 NPIPA5A0A0B4J1W7 369 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 NPIPA7E9PJI5 369 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 MSTNO14793 375 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 NPIPA8P0DM63 369 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 CPEP16870 476 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 HTR2CP28335 458 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 SLC6A8P48029 635 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 POLR2HP52434 150 aaKnown RBP10.65□□□□□ -0.7
VPS39-201ENST00000318006 ACVR1Q04771 509 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 RIN1Q13671 783 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 SLC22A6Q4U2R8 563 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 FBXW12Q6X9E4 464 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 COX15Q7KZN9 410 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 KCNRGQ8N5I3 272 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 LMNTD1Q8N9Z9 388 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 LIN7BQ9HAP6 207 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 GNG13Q9P2W3 67 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 ADAM29Q9UKF5 820 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 ADAMTSL1Q8N6G6 1762 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 TAF1LQ8IZX4 1826 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 SGK494L7N484 410 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 SOCS6O14544 535 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 RAC2P15153 192 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 HOXA9P31269 272 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 SLC19A1P41440 591 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 EVX1P49640 407 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 RBMS3Q6XE24 437 aaKnown RBP10.65□□□□□ -0.7
VPS39-201ENST00000318006 PRSS45Q7RTY3 260 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 MDGA2Q7Z553 956 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 RIMKLAQ8IXN7 391 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 LFNGQ8NES3 379 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 TMEM106AQ96A25 262 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 SGCZQ96LD1 299 aa10.65□□□□□ -0.7
VPS39-201ENST00000318006 ZP3P21754 424 aa10.65□□□□□ -0.71
VPS39-201ENST00000318006 PTGER1P34995 402 aa10.65□□□□□ -0.71
VPS39-201ENST00000318006 MRPS21P82921 87 aaKnown RBP10.65□□□□□ -0.71
VPS39-201ENST00000318006 MALLQ13021 153 aa10.65□□□□□ -0.71
VPS39-201ENST00000318006 VRK3Q8IV63 474 aa10.65□□□□□ -0.71
VPS39-201ENST00000318006 TBC1D20Q96BZ9 403 aa10.65□□□□□ -0.71
VPS39-201ENST00000318006 SENP5Q96HI0 755 aaPredicted RBP10.65□□□□□ -0.71
VPS39-201ENST00000318006 EPHX3Q9H6B9 360 aa10.65□□□□□ -0.71
VPS39-201ENST00000318006 CYTIPO60759 359 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 KCNJ5P48544 419 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 DAP3P51398 398 aaKnown RBP10.64□□□□□ -0.71
VPS39-201ENST00000318006 SYT14P1Q58G82 188 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 SH2D5Q6ZV89 423 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 UEVLDQ8IX04 471 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 LSMEM1Q8N8F7 131 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 P2RY12Q9H244 342 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 GAREM1Q9H706 876 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 SERTAD4Q9NUC0 356 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 BRWD3Q6RI45 1802 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 CROCCQ5TZA2 2017 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 TMEM269A0A1B0GVZ9 245 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 LINC01553A4QN01 128 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 LRIT2A6NDA9 550 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 OR2T1O43869 369 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 SLCO2B1O94956 709 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 IGLV3-27P01718 113 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 MTHFD2P13995 350 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 ETV5P41161 510 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 UBE2IP63279 158 aaKnown RBP10.64□□□□□ -0.71
VPS39-201ENST00000318006 CHRNEQ04844 493 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 OR7E24Q6IFN5 339 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 CCDC190Q86UF4 302 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 MCATQ8IVS2 390 aaKnown RBP10.64□□□□□ -0.71
VPS39-201ENST00000318006 CHTF18Q8WVB6 975 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 RNF170Q96K19 258 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 HHIPQ96QV1 700 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 NAA11Q9BSU3 229 aaPredicted RBP10.64□□□□□ -0.71
VPS39-201ENST00000318006 A0A1W2PPV4 95 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 H7C1Q1 480 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 LDB3O75112 727 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 FPR3P25089 353 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 FASLGP48023 281 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 MRPS34P82930 218 aaKnown RBP10.64□□□□□ -0.71
VPS39-201ENST00000318006 RBM39Q14498 530 aaKnown RBP10.64□□□□□ -0.71
VPS39-201ENST00000318006 AFMIDQ63HM1 303 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 BTLAQ7Z6A9 289 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 ZNF561Q8N587 486 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 RCBTB1Q8NDN9 531 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 ZNF578Q96N58 590 aaPredicted RBP10.64□□□□□ -0.71
VPS39-201ENST00000318006 LDAHQ9H6V9 325 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 LTB4R2Q9NPC1 389 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 SIDT1Q9NXL6 827 aaKnown RBP10.64□□□□□ -0.71
VPS39-201ENST00000318006 STEAP1Q9UHE8 339 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 PCDHGA5Q9Y5G8 931 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 TAPBPO15533 448 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 SLC16A7O60669 478 aa10.64□□□□□ -0.71
VPS39-201ENST00000318006 PVRP15151 417 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms