RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 TMEM106AQ96A25 262 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 FAM3DQ96BQ1 224 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 SLC39A13Q96H72 371 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 KIRREL1Q96J84 757 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 NOX4Q9NPH5 578 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 SLC39A9Q9NUM3 307 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 SLC23A2Q9UGH3 650 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 USP3Q9Y6I4 520 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 MEIS3P1A6NDR6 274 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 HOXA1P49639 335 aaPredicted RBP7.09□□□□□ -1.27
SF3B3-201ENST00000302516 KCNJ10P78508 379 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 FAM189BP81408 668 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 SLC9A3R2Q15599 337 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 OGFOD3Q6PK18 319 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 ZNF620Q6ZNG0 422 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 OR9K2Q8NGE7 335 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 TAF9BQ9HBM6 251 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 BOKQ9UMX3 212 aaPredicted RBP7.09□□□□□ -1.27
SF3B3-201ENST00000302516 MCRIP1C9JLW8 97 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 SGK494L7N484 410 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 SUSD5O60279 629 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 NSA2O95478 260 aaKnown RBP7.09□□□□□ -1.27
SF3B3-201ENST00000302516 ZNF485Q8NCK3 441 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 ZNF480Q8WV37 535 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 KLF16Q9BXK1 252 aaPredicted RBP7.09□□□□□ -1.27
SF3B3-201ENST00000302516 B3GAT1Q9P2W7 334 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 LHX3Q9UBR4 397 aa7.09□□□□□ -1.27
SF3B3-201ENST00000302516 PRSS38A1L453 326 aa7.09□□□□□ -1.28
SF3B3-201ENST00000302516 STMND1H3BQB6 276 aa7.09□□□□□ -1.28
SF3B3-201ENST00000302516 SLC16A7O60669 478 aa7.09□□□□□ -1.28
SF3B3-201ENST00000302516 CLN5O75503 358 aa7.09□□□□□ -1.28
SF3B3-201ENST00000302516 F10P00742 488 aa7.09□□□□□ -1.28
SF3B3-201ENST00000302516 F2RL1P55085 397 aa7.09□□□□□ -1.28
SF3B3-201ENST00000302516 ZNF425Q6IV72 752 aa7.09□□□□□ -1.28
SF3B3-201ENST00000302516 BAGE3Q86Y29 109 aa7.09□□□□□ -1.28
SF3B3-201ENST00000302516 BAGE2Q86Y30 109 aa7.09□□□□□ -1.28
SF3B3-201ENST00000302516 PIANPQ8IYJ0 282 aa7.09□□□□□ -1.28
SF3B3-201ENST00000302516 NTN4Q9HB63 628 aa7.09□□□□□ -1.28
SF3B3-201ENST00000302516 ATXN7L1Q9ULK2 861 aaPredicted RBP7.09□□□□□ -1.28
SF3B3-201ENST00000302516 A0A0B4J2A0 478 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 H3BML4 177 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 ACOT8O14734 319 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 HPNP05981 417 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 C18orf63Q68DL7 685 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 KDF1Q8NAX2 398 aaPredicted RBP7.08□□□□□ -1.28
SF3B3-201ENST00000302516 OR4N2Q8NGD1 307 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 OR4A16Q8NH70 328 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 HHIPL1Q96JK4 782 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 ZNF583Q96ND8 569 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 SGPP1Q9BX95 441 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 SHPKQ9UHJ6 478 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 C4orf47A7E2U8 309 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 HOXB5P09067 269 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 MSX1P28360 303 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 SOX18P35713 384 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 KANSL1Q7Z3B3 1105 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 LILRA2Q8N149 483 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.08□□□□□ -1.281e-6■■□□□ 12.2
SF3B3-201ENST00000302516 SNX11Q9Y5W9 270 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 IL3RAP26951 378 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 POU3F1Q03052 451 aaPredicted RBP7.08□□□□□ -1.28
SF3B3-201ENST00000302516 MAVSQ7Z434 540 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 MMP21Q8N119 569 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 NPRL2Q8WTW4 380 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 NUDT9Q9BW91 350 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 GPR62Q9BZJ7 368 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 FN3KRPQ9HA64 309 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 IL23AQ9NPF7 189 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 TRABD2BA6NFA1 517 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 SNRPGP15A8MWD9 76 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 SULT1C4O75897 302 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 CT45A6P0DMU7 189 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 CT45A5P0DMU8 189 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 CT45A7P0DMV0 189 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 CT45A8P0DMV1 189 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 CT45A9P0DMV2 189 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 CD79AP11912 226 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 TACR1P25103 407 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 TACR3P29371 465 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 SFTPDP35247 375 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 SLC36A2Q495M3 483 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 CT45A2Q5DJT8 189 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 CT45A1Q5HYN5 189 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 FAM57BQ71RH2 274 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 BPHLQ86WA6 291 aaPredicted RBP7.08□□□□□ -1.28
SF3B3-201ENST00000302516 ADGRF3Q8IZF5 1079 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 CT45A3Q8NHU0 189 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 GALNT9Q9HCQ5 603 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 KCMF1Q9P0J7 381 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 NDRG3Q9UGV2 375 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 MRPS28Q9Y2Q9 187 aaKnown RBP7.08□□□□□ -1.28
SF3B3-201ENST00000302516 TMEM184BQ9Y519 407 aaPredicted RBP7.08□□□□□ -1.28
SF3B3-201ENST00000302516 A0A1B0GUH1 482 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 ZNF593O00488 134 aaPredicted RBP7.08□□□□□ -1.28
SF3B3-201ENST00000302516 NUPL2O15504 423 aaKnown RBP7.08□□□□□ -1.28
SF3B3-201ENST00000302516 FBXO24O75426 580 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 CTXN2P0C2S0 81 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 SNRPBP14678 240 aaKnown RBP7.08□□□□□ -1.28
SF3B3-201ENST00000302516 RAB5AP20339 215 aa7.08□□□□□ -1.28
SF3B3-201ENST00000302516 DUSP1P28562 367 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 111.4 ms