RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 CMKLR1Q99788 373 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 ESRP2Q9H6T0 727 aaKnown RBP5.95□□□□□ -1.46
VPS35-201ENST00000299138 BCO1Q9HAY6 547 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 GAR1Q9NY12 217 aaKnown RBP5.95□□□□□ -1.46
VPS35-201ENST00000299138 IL17BQ9UHF5 180 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 POMT2Q9UKY4 750 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 SLC7A11Q9UPY5 501 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 COL4A5P29400 1685 aa5.95□□□□□ -1.46
VPS35-201ENST00000299138 ZFP92A6NM28 416 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 CD300LBA8K4G0 201 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 GABRR3A8MPY1 467 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 RNH1P13489 461 aaKnown RBP5.94□□□□□ -1.46
VPS35-201ENST00000299138 FABP4P15090 132 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 CALCRP30988 508 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 SLC19A1P41440 591 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 OR1E2P47887 323 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 RANP62826 216 aaKnown RBP5.94□□□□□ -1.46
VPS35-201ENST00000299138 CDK5Q00535 292 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 SLBPQ14493 270 aaKnown RBP eCLIP5.94□□□□□ -1.46
VPS35-201ENST00000299138 TMEM31Q5JXX7 168 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 PRAMEF14Q5SWL7 426 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 COL5A1-AS1Q5SY13 56 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 ZNF362Q5T0B9 420 aaPredicted RBP5.94□□□□□ -1.46
VPS35-201ENST00000299138 ZNF770Q6IQ21 691 aaPredicted RBP5.94□□□□□ -1.46
VPS35-201ENST00000299138 H3F3CQ6NXT2 135 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 FUT10Q6P4F1 479 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 TMEM88Q6PEY1 159 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 LRFN4Q6PJG9 635 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 NLRC3Q7RTR2 1065 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 SUMF1Q8NBK3 374 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 OR5M11Q96RB7 305 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 EDEM2Q9BV94 578 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 PRR14Q9BWN1 585 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 TOLLIPQ9H0E2 274 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 DMRT3Q9NQL9 472 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 FLVCR2Q9UPI3 526 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 TBC1D3EA0A087X179 549 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 NXPH3O95157 252 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 POMCP01189 267 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 F11P03951 625 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 UBL4AP11441 157 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 MAOBP27338 520 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 GIFP27352 417 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 SPINT3P49223 89 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 CCR8P51685 355 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 CLRN1P58418 232 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 RPP30P78346 268 aaKnown RBP5.94□□□□□ -1.46
VPS35-201ENST00000299138 DEFB115Q30KQ5 88 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 ZMAT1Q5H9K5 638 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 RPL7L1Q6DKI1 246 aaKnown RBP5.94□□□□□ -1.46
VPS35-201ENST00000299138 AWAT2Q6E213 333 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 IL34Q6ZMJ4 242 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 NPAS4Q8IUM7 802 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 C9orf62Q8N4C0 152 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 ZNF321PQ8N8H1 164 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 GIMAP1Q8WWP7 306 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 MAP6Q96JE9 813 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 INPP5KQ9BT40 448 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 OR8D2Q9GZM6 311 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 METTL17Q9H7H0 456 aaPredicted RBP5.94□□□□□ -1.46
VPS35-201ENST00000299138 ZNF331Q9NQX6 463 aaPredicted RBP5.94□□□□□ -1.46
VPS35-201ENST00000299138 AK3Q9UIJ7 227 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 UPK3BL1B0FP48 263 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 UPK3BL2E5RIL1 263 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 TMX2-CTNND1H3BSU7 103 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 GABARAPH6UMI1 98 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 SUSD5O60279 629 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 TBL1XO60907 577 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 AKR7A3O95154 331 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 ASGR2P07307 311 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 POU3F4P49335 361 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 ERVK-16P61578 105 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 MEP1BQ16820 701 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 DCXRQ7Z4W1 244 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 MSI2Q96DH6 328 aaKnown RBP5.94□□□□□ -1.46
VPS35-201ENST00000299138 CITED1Q99966 193 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 WRAP53Q9BUR4 548 aaKnown RBP5.94□□□□□ -1.46
VPS35-201ENST00000299138 SGPP1Q9BX95 441 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 UBQLN4Q9NRR5 601 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 SLC22A11Q9NSA0 550 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 ZCCHC3Q9NUD5 404 aaKnown RBP5.94□□□□□ -1.46
VPS35-201ENST00000299138 SUSD2Q9UGT4 822 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 CFAP20Q9Y6A4 193 aaKnown RBP5.94□□□□□ -1.46
VPS35-201ENST00000299138 PARP14Q460N5 1801 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 UNC119BA6NIH7 251 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 RNF13O43567 381 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 ATG12O94817 140 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 C6orf47O95873 294 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 H2BFMP0C1H6 154 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 FOLR1P15328 257 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 IMPA1P29218 277 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 TAS2R31P59538 309 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 CRHR2Q13324 411 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 ZNF79Q15937 498 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 ADAMTS18Q8TE60 1221 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 SUSD6Q92537 303 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 YIPF5Q969M3 257 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 TMEM18Q96B42 140 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 SLC22A18Q96BI1 424 aa5.94□□□□□ -1.46
VPS35-201ENST00000299138 ZBTB8AQ96BR9 441 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms